C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin-dependent kinase 9 (CDC2-related kinase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009555 Cdk9 10090 - 2:32705784-32713076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009699 Cdk9-001 32707438-32712784 protein_coding
  ENSMUST00000120105 Cdk9-002 32707444-32712267 protein_coding
  ENSMUST00000123170 Cdk9-006 32707849-32713076 nonsense_mediated_decay
  ENSMUST00000125058 Cdk9-005 32705784-32711047 retained_intron
  ENSMUST00000128265 Cdk9-008 32709656-32710502 processed_transcript
  ENSMUST00000130399 Cdk9-009 32708101-32709721 processed_transcript
  ENSMUST00000144210 Cdk9-007 32709532-32710349 processed_transcript
  ENSMUST00000154131 Cdk9-004 32709856-32712757 nonsense_mediated_decay
  ENSMUST00000155205 Cdk9-003 32710158-32712253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009699ENSMUST00000120105ENSMUST00000123170ENSMUST00000125058ENSMUST00000154131ENSMUST00000155205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009699 11.310±3.08 27.165±10.92 45.608±4.27 52.354±33.04 26.603±6.41 18.476±4.91 5.824±0.79 15.324±2.41 25.571±15.89 22.518±6.96 10.154±2.02 22.428±9.22 24.605±11.55 13.839±5.36
ENSMUST00000120105 29.446±4.72 31.496±8.22 N/A 34.978±0.00 27.801±10.32 19.725±4.19 7.792±3.43 19.325±4.12 11.671±5.67 25.868±7.73 2.380±0.07 38.651±14.59 30.878±12.67 13.140±5.88
ENSMUST00000123170 N/A 12.503±3.78 N/A N/A 8.487±0.00 N/A N/A N/A 4.680±0.00 N/A N/A N/A N/A N/A
ENSMUST00000125058 N/A N/A N/A N/A 2.704±0.00 N/A N/A N/A N/A N/A N/A 1.813±0.10 N/A N/A
ENSMUST00000154131 N/A N/A 23.908±0.00 9.969±0.00 26.799±0.00 N/A 4.806±0.00 N/A N/A N/A N/A 12.242±4.52 N/A 7.617±6.56
ENSMUST00000155205 N/A N/A N/A 118.362±0.00 N/A N/A N/A N/A N/A N/A N/A 94.761±0.00 161.806±25.84 25.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000H9 CIL_0000H9_0002 CGP 2:32682609-32713076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003682 IDA chromatin binding
GO:0004672 IEA protein kinase activity
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006282 IEA regulation of DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 ISO protein phosphorylation
GO:0008023 ISS transcription elongation factor complex
GO:0008024 IDA:ISS positive transcription elongation factor complex b
GO:0008353 IEA RNA polymerase II carboxy-terminal domain kinase activity
GO:0016020 IEA membrane
GO:0016605 IEA PML body
GO:0017069 IDA snRNA binding
GO:0031056 IEA regulation of histone modification
GO:0043111 IEA replication fork arrest
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044212 IDA transcription regulatory region DNA binding
GO:0071157 IEA negative regulation of cell cycle arrest
GO:0071345 IEA cellular response to cytokine stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044811 cdk9 cyclin-dependent kinase 9 (CDC2-related kinase) protein_coding Danio_rerio
ENSG00000136807 CDK9 cyclin-dependent kinase 9 protein_coding Homo_sapiens

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