C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137449 CPEB2 9606 + 4:15002674-15070153 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259997 CPEB2-007 15003936-15070149 protein_coding
  ENST00000345451 CPEB2-002 15003898-15066626 protein_coding
  ENST00000382395 CPEB2-005 15003936-15070151 protein_coding
  ENST00000382401 CPEB2-006 15003936-15070151 protein_coding
  ENST00000442003 CPEB2-201 15002674-15070153 protein_coding
  ENST00000503926 CPEB2-009 15007367-15017434 retained_intron
  ENST00000507071 CPEB2-001 15003898-15066626 protein_coding
  ENST00000509684 CPEB2-008 15054133-15063871 protein_coding
  ENST00000538197 CPEB2-202 15002674-15070153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259997ENST00000382395ENST00000382401ENST00000442003ENST00000507071ENST00000509684ENST00000538197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259997 N/A N/A 1.570±0.00 3.033±0.40 1.827±0.00 1.795±0.00 1.258±0.82 2.490±0.00 1.690±0.00 1.915±0.00 0.735±0.00 0.574±0.00 1.277±0.00 N/A
ENST00000382395 6.120±0.00 4.287±0.00 N/A 3.757±0.00 2.000±0.78 1.329±0.22 N/A 1.524±0.00 1.484±0.02 2.220±0.00 1.206±0.00 1.214±0.36 0.519±0.18 N/A
ENST00000382401 N/A 1.593±0.00 N/A N/A 1.868±0.80 1.476±0.28 N/A N/A 2.252±0.00 1.933±0.00 0.616±0.00 N/A N/A N/A
ENST00000442003 N/A N/A N/A 1.352±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000507071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A 21.793±5.69
ENST00000509684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.289±0.00 N/A N/A N/A
ENST00000538197 N/A N/A 1.125±0.00 0.899±0.00 N/A N/A 1.169±0.15 N/A N/A 0.818±0.00 0.516±0.00 0.822±0.00 N/A 7.337±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L6 CIL_0007L6_0001 UCNEbase 4:14574509-15069972
CIL_00026K CIL_00026K_0001 CGP 4:15002674-15446166

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0005095 ISS GTPase inhibitor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IEA polysome
GO:0008187 IEA poly-pyrimidine tract binding
GO:0032869 IDA cellular response to insulin stimulus
GO:0033125 IEA negative regulation of GTP catabolic process
GO:0034260 ISS negative regulation of GTPase activity
GO:0034599 ISS cellular response to oxidative stress
GO:0035925 ISS mRNA 3'-UTR AU-rich region binding
GO:0043022 ISS ribosome binding
GO:0043023 ISS ribosomal large subunit binding
GO:0043024 ISS ribosomal small subunit binding
GO:0044822 IDA poly(A) RNA binding
GO:0045900 IEA negative regulation of translational elongation
GO:0071243 ISS cellular response to arsenic-containing substance
GO:0071456 IDA cellular response to hypoxia
GO:1900248 ISS negative regulation of cytoplasmic translational elongation
GO:1990124 ISS messenger ribonucleoprotein complex
GO:2000766 IMP negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052604 CPEB2 cytoplasmic polyadenylation element binding protein 2 protein_coding Danio_rerio
ENSMUSG00000039782 Cpeb2 cytoplasmic polyadenylation element binding protein 2 protein_coding Mus_musculus

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