C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382395 CPEB2-005 ENSG00000137449 9606 + 4:15003936-15070151 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000382395
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000382395 6.120±0.00 4.287±0.00 3.757±0.00 2.000±0.78 1.329±0.22 1.524±0.00 1.484±0.02 2.220±0.00 1.206±0.00 1.214±0.36 0.519±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L6 CIL_0007L6_0001 UCNEbase 4:14574509-15069972
CIL_00026K CIL_00026K_0001 CGP 4:15002674-15446166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0005095 ISS GTPase inhibitor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0032869 IDA cellular response to insulin stimulus
GO:0034260 ISS negative regulation of GTPase activity
GO:0034599 ISS cellular response to oxidative stress
GO:0035925 ISS mRNA 3'-UTR AU-rich region binding
GO:0043022 ISS ribosome binding
GO:0043023 ISS ribosomal large subunit binding
GO:0043024 ISS ribosomal small subunit binding
GO:0044822 IDA poly(A) RNA binding
GO:0071243 ISS cellular response to arsenic-containing substance
GO:0071456 IDA cellular response to hypoxia
GO:1900248 ISS negative regulation of cytoplasmic translational elongation
GO:1990124 ISS messenger ribonucleoprotein complex
GO:2000766 IMP negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169035 Cpeb2-202 protein_coding Mus_musculus 0 4519
ENSMUST00000166713 Cpeb2-201 protein_coding Mus_musculus 0 3522
ENSMUST00000114065 Cpeb2-001 protein_coding Mus_musculus 0 3522
ENSMUST00000114066 Cpeb2-002 protein_coding Mus_musculus 0 3073
ENSMUST00000127599 Cpeb2-003 processed_transcript Mus_musculus 0 368

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