C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039782 Cpeb2 10090 + 5:43233463-43289724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114065 Cpeb2-001 43233956-43289724 protein_coding
  ENSMUST00000114066 Cpeb2-002 43233956-43287022 protein_coding
  ENSMUST00000127599 Cpeb2-003 43237316-43246459 processed_transcript
  ENSMUST00000166713 Cpeb2-201 43233463-43289724 protein_coding
  ENSMUST00000169035 Cpeb2-202 43233463-43289724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114065ENSMUST00000114066ENSMUST00000127599ENSMUST00000166713ENSMUST00000169035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114065 2.481±0.43 2.858±0.12 4.117±1.94 6.665±2.78 1.390±0.96 1.505±0.42 2.561±0.42 2.463±0.48 1.826±1.05 2.770±0.81 2.179±0.40 1.838±0.68 2.817±0.87 9.272±7.25
ENSMUST00000114066 N/A N/A N/A N/A 1.251±0.28 N/A N/A N/A N/A N/A N/A N/A N/A 44.409±16.71
ENSMUST00000127599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.634±0.00
ENSMUST00000166713 N/A N/A N/A N/A N/A 0.483±0.00 N/A N/A 0.476±0.00 0.247±0.00 N/A 0.430±0.00 N/A 15.577±8.09
ENSMUST00000169035 0.919±0.40 1.738±0.12 1.974±0.49 3.308±2.38 1.208±0.63 0.931±0.50 0.692±0.09 0.553±0.08 0.445±0.15 0.470±0.22 0.866±0.22 0.608±0.35 1.023±0.34 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L6 CIL_0007L6_0002 UCNEbase 5:42800809-43289546
CIL_00026K CIL_00026K_0002 CGP 5:43233463-43618817

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0005095 ISS GTPase inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008187 IDA poly-pyrimidine tract binding
GO:0032869 ISS cellular response to insulin stimulus
GO:0033125 IGI negative regulation of GTP catabolic process
GO:0034260 ISS negative regulation of GTPase activity
GO:0034599 IDA cellular response to oxidative stress
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0043022 IDA ribosome binding
GO:0043023 ISS ribosomal large subunit binding
GO:0043024 ISS ribosomal small subunit binding
GO:0044822 IEA poly(A) RNA binding
GO:0045900 IGI negative regulation of translational elongation
GO:0071243 IDA cellular response to arsenic-containing substance
GO:0071456 IDA cellular response to hypoxia
GO:1900248 ISS negative regulation of cytoplasmic translational elongation
GO:1990124 IDA messenger ribonucleoprotein complex
GO:2000766 IDA negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052604 CPEB2 cytoplasmic polyadenylation element binding protein 2 protein_coding Danio_rerio
ENSG00000137449 CPEB2 cytoplasmic polyadenylation element binding protein 2 protein_coding Homo_sapiens

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