C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rab geranylgeranyltransferase, beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137955 RABGGTB 9606 + 1:75786197-75795079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319942 RABGGTB-001 75786201-75795079 protein_coding
  ENST00000370826 RABGGTB-012 75786231-75790113 protein_coding
  ENST00000459697 RABGGTB-010 75793382-75794834 processed_transcript
  ENST00000461653 RABGGTB-006 75787496-75792250 processed_transcript
  ENST00000462042 RABGGTB-011 75786699-75789996 processed_transcript
  ENST00000467748 RABGGTB-009 75791269-75791859 processed_transcript
  ENST00000470201 RABGGTB-013 75786700-75792286 processed_transcript
  ENST00000471759 RABGGTB-002 75786701-75794803 processed_transcript
  ENST00000473406 RABGGTB-004 75786228-75791571 processed_transcript
  ENST00000485459 RABGGTB-007 75786228-75792254 processed_transcript
  ENST00000489450 RABGGTB-008 75787523-75791518 processed_transcript
  ENST00000491266 RABGGTB-014 75786703-75792302 processed_transcript
  ENST00000496055 RABGGTB-003 75786197-75794833 processed_transcript
  ENST00000497648 RABGGTB-005 75786243-75788783 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319942ENST00000459697ENST00000471759ENST00000473406ENST00000496055ENST00000497648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319942 12.398±0.00 10.565±0.00 N/A 17.945±3.23 15.240±0.00 25.504±0.00 11.505±0.00 22.538±0.00 10.930±4.90 16.780±0.00 21.777±0.00 19.442±1.08 12.581±4.55 17.329±1.69
ENST00000459697 N/A 11.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471759 N/A N/A N/A N/A 5.583±0.00 5.529±0.00 N/A N/A N/A N/A N/A 6.941±1.44 N/A N/A
ENST00000473406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.815±0.00 N/A N/A
ENST00000496055 N/A 4.636±0.00 2.785±0.00 2.965±0.00 6.400±0.00 5.064±0.00 N/A N/A 2.103±0.00 4.442±0.00 N/A 3.967±0.29 N/A N/A
ENST00000497648 N/A N/A N/A N/A N/A 10.193±0.00 N/A N/A 8.083±0.00 N/A N/A 8.778±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004663 ISS Rab geranylgeranyltransferase activity
GO:0005515 IPI protein binding
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0006464 NAS cellular protein modification process
GO:0007601 TAS visual perception
GO:0008270 ISS zinc ion binding
GO:0017137 ISS Rab GTPase binding
GO:0018344 ISS protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068587 rabggtb Rab geranylgeranyltransferase, beta subunit protein_coding Danio_rerio
ENSMUSG00000038975 Rabggtb Rab geranylgeranyl transferase, b subunit protein_coding Mus_musculus

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