C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: dynein, cytoplasmic 2, light intermediate chain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138036 DYNC2LI1 9606 + 2:43774039-43810010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260605 DYNC2LI1-001 43774039-43810010 protein_coding
  ENST00000378587 DYNC2LI1-004 43776823-43805555 protein_coding
  ENST00000398823 DYNC2LI1-003 43774064-43795183 protein_coding
  ENST00000406852 DYNC2LI1-002 43774049-43795179 protein_coding
  ENST00000462426 DYNC2LI1-009 43774086-43795959 nonsense_mediated_decay
  ENST00000479242 DYNC2LI1-007 43774049-43795930 nonsense_mediated_decay
  ENST00000482738 DYNC2LI1-006 43801271-43805177 retained_intron
  ENST00000489222 DYNC2LI1-008 43774064-43800917 processed_transcript
  ENST00000496980 DYNC2LI1-005 43774049-43789721 nonsense_mediated_decay
  ENST00000605786 DYNC2LI1-010 43774082-43809997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260605ENST00000378587ENST00000398823ENST00000406852ENST00000462426ENST00000479242ENST00000489222ENST00000496980ENST00000605786
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260605 1.396±0.00 3.192±0.00 2.251±0.00 N/A 0.525±0.00 N/A N/A 1.178±0.53 N/A 4.647±2.20 1.210±0.00 7.511±1.37
ENST00000378587 N/A N/A N/A N/A N/A 2.143±0.00 N/A 0.966±0.00 N/A N/A N/A N/A
ENST00000398823 N/A N/A N/A N/A N/A N/A 1.197±0.00 0.355±0.00 N/A N/A N/A N/A
ENST00000406852 1.670±0.00 1.491±0.00 2.089±0.00 0.962±0.00 0.179±0.00 N/A N/A 1.482±0.00 N/A 2.613±0.00 N/A N/A
ENST00000462426 N/A N/A N/A 2.622±0.00 N/A N/A N/A N/A 0.936±0.00 N/A N/A N/A
ENST00000479242 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.808±0.00 N/A N/A
ENST00000489222 N/A N/A N/A N/A N/A N/A N/A 1.633±0.00 1.170±0.00 N/A 1.602±0.00 N/A
ENST00000496980 N/A N/A N/A N/A 1.685±0.00 3.205±0.00 N/A N/A N/A N/A N/A N/A
ENST00000605786 N/A 3.808±0.00 1.706±0.00 0.625±0.00 0.426±0.25 4.441±0.00 1.151±0.06 1.511±0.00 0.251±0.02 6.129±1.40 1.990±0.46 11.730±3.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BS CIL_0004BS_0001 CGP 2:43637273-43810010
CIL_0001XP CIL_0001XP_0001 CGP 2:43774039-43838865

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005858 ISS axonemal dynein complex
GO:0005881 ISS cytoplasmic microtubule
GO:0005930 ISS axoneme
GO:0007368 IEA determination of left/right symmetry
GO:0008152 IEA metabolic process
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030990 ISS intraciliary transport particle
GO:0031512 ISS motile primary cilium
GO:0036064 ISS ciliary basal body
GO:0042384 IEA cilium assembly
GO:0045177 ISS apical part of cell
GO:0072372 ISS primary cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039770 dync2li1 dynein, cytoplasmic 2, light intermediate chain 1 protein_coding Danio_rerio
ENSMUSG00000024253 Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 protein_coding Mus_musculus

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