C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004BS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152527-ENSG00000138036 CGP 9606 2:43637273-43810010
GeneTranscriptPositionBiotype
ENSG00000138036 (DYNC2LI1)
dynein, cytoplasmic 2, light intermediate chain 1 		ENST00000260605 (DYNC2LI1-001) 43774039-43810010 protein_coding
ENST00000378587 (DYNC2LI1-004) 43776823-43805555 protein_coding
ENST00000398823 (DYNC2LI1-003) 43774064-43795183 protein_coding
ENST00000406852 (DYNC2LI1-002) 43774049-43795179 protein_coding
ENST00000462426 (DYNC2LI1-009) 43774086-43795959 nonsense_mediated_decay
ENST00000479242 (DYNC2LI1-007) 43774049-43795930 nonsense_mediated_decay
ENST00000482738 (DYNC2LI1-006) 43801271-43805177 retained_intron
ENST00000489222 (DYNC2LI1-008) 43774064-43800917 processed_transcript
ENST00000496980 (DYNC2LI1-005) 43774049-43789721 nonsense_mediated_decay
ENST00000605786 (DYNC2LI1-010) 43774082-43809997 protein_coding
ENSG00000152527 (PLEKHH2)
pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 		ENST00000282406 (PLEKHH2-001) 43637273-43767987 protein_coding
ENST00000405000 (PLEKHH2-002) 43637308-43765792 retained_intron
ENST00000405223 (PLEKHH2-003) 43637300-43741365 retained_intron
ENST00000460356 (PLEKHH2-005) 43692230-43695204 retained_intron
ENST00000480103 (PLEKHH2-008) 43731541-43743870 retained_intron
ENST00000490038 (PLEKHH2-007) 43745899-43765482 nonsense_mediated_decay
ENST00000491692 (PLEKHH2-004) 43637339-43697239 nonsense_mediated_decay
ENST00000493408 (PLEKHH2-006) 43740985-43744134 retained_intron
ENSG00000223658 (AC011242.6)
 ENST00000475092 (AC011242.6-001) 43675380-43676322 processed_pseudogene
ENSG00000229695 (AC011242.5)
 ENST00000433596 (AC011242.5-001) 43680465-43681622 processed_pseudogene
ENSG00000252490 (RN7SKP66)
RNA, 7SK small nuclear pseudogene 66 		ENST00000516681 (RN7SKP66-201) 43772120-43772350 misc_RNA
CIL_0004BS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040852-ENSMUSG00000024253 CGP 10090 17:84511895-84655558
GeneTranscriptPositionBiotype
ENSMUSG00000024253 (Dync2li1)
dynein cytoplasmic 2 light intermediate chain 1 		ENSMUST00000025101 (Dync2li1-201) 84626496-84655558 protein_coding
ENSMUSG00000040852 (Plekhh2)
pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 		ENSMUST00000047206 (Plekhh2-201) 84511895-84622142 protein_coding
ENSMUSG00000065319 (Gm26066)
predicted gene, 26066 		ENSMUST00000083385 (Gm26066-201) 84624402-84624510 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BS_0001ENSG00000138036ENST00000260605ENST00000378587ENST00000398823ENST00000406852ENST00000462426ENST00000479242ENST00000482738ENST00000489222ENST00000496980ENST00000605786ENSG00000152527ENST00000282406ENST00000405000ENST00000405223ENST00000460356ENST00000480103ENST00000490038ENST00000491692ENST00000493408ENSG00000223658ENST00000475092ENSG00000229695ENST00000433596ENSG00000252490ENST00000516681CIL_0004BS_0002ENSMUSG00000024253ENSMUST00000025101ENSMUSG00000040852ENSMUST00000047206ENSMUSG00000065319ENSMUST00000083385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BS_0001ENSG00000138036ENST00000260605ENST00000378587ENST00000398823ENST00000406852ENST00000462426ENST00000479242ENST00000489222ENST00000496980ENST00000605786ENSG00000152527ENST00000282406ENST00000405000ENST00000405223ENST00000493408ENSG00000223658ENST00000475092ENSG00000229695ENST00000433596ENSG00000252490ENST00000516681CIL_0004BS_0002ENSMUSG00000024253ENSMUST00000025101ENSMUSG00000040852ENSMUST00000047206ENSMUSG00000065319ENSMUST00000083385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138036 ENST00000260605 N/A N/A 1.396±0.00 3.192±0.00 2.251±0.00 N/A 0.525±0.00 N/A N/A 1.178±0.53 N/A 4.647±2.20 1.210±0.00 7.511±1.37
ENST00000378587 N/A N/A N/A N/A N/A N/A N/A 2.143±0.00 N/A 0.966±0.00 N/A N/A N/A N/A
ENST00000398823 N/A N/A N/A N/A N/A N/A N/A N/A 1.197±0.00 0.355±0.00 N/A N/A N/A N/A
ENST00000406852 N/A N/A 1.670±0.00 1.491±0.00 2.089±0.00 0.962±0.00 0.179±0.00 N/A N/A 1.482±0.00 N/A 2.613±0.00 N/A N/A
ENST00000462426 N/A N/A N/A N/A N/A 2.622±0.00 N/A N/A N/A N/A 0.936±0.00 N/A N/A N/A
ENST00000479242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.808±0.00 N/A N/A
ENST00000482738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489222 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.633±0.00 1.170±0.00 N/A 1.602±0.00 N/A
ENST00000496980 N/A N/A N/A N/A N/A N/A 1.685±0.00 3.205±0.00 N/A N/A N/A N/A N/A N/A
ENST00000605786 N/A N/A N/A 3.808±0.00 1.706±0.00 0.625±0.00 0.426±0.25 4.441±0.00 1.151±0.06 1.511±0.00 0.251±0.02 6.129±1.40 1.990±0.46 11.730±3.10
ENSG00000152527 ENST00000282406 1.037±0.00 0.327±0.00 N/A 0.325±0.09 1.479±0.10 1.612±0.00 0.142±0.00 0.809±0.00 0.776±0.70 6.075±1.23 0.056±0.02 2.092±1.11 0.418±0.16 1.324±0.13
ENST00000405000 N/A N/A N/A 0.093±0.00 N/A 0.301±0.00 0.071±0.00 N/A 0.877±0.00 N/A 0.033±0.00 0.851±0.41 0.149±0.00 0.545±0.00
ENST00000405223 N/A N/A N/A N/A N/A 1.363±0.00 N/A 0.644±0.00 1.114±0.00 6.458±0.00 N/A 1.412±0.00 N/A N/A
ENST00000460356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493408 N/A N/A N/A 3.120±0.00 N/A 7.401±0.00 N/A N/A N/A N/A 0.452±0.00 N/A N/A N/A
ENSG00000223658 ENST00000475092 0.067±0.00 N/A N/A 0.315±0.00 0.468±0.01 N/A 0.085±0.00 0.596±0.00 0.058±0.01 N/A N/A 0.567±0.33 0.332±0.02 2.061±0.69
ENSG00000229695 ENST00000433596 0.009±0.00 0.135±0.00 N/A 0.009±0.00 0.009±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A
ENSG00000252490 ENST00000516681 N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024253 ENSMUST00000025101 4.355±2.39 0.760±0.18 10.406±0.21 8.122±0.50 1.003±0.34 0.903±0.29 1.500±0.35 10.590±1.51 0.870±0.89 6.917±1.45 1.759±0.50 7.797±8.12 4.154±1.43 10.414±3.21
ENSMUSG00000040852 ENSMUST00000047206 5.216±2.98 0.961±0.23 3.549±0.49 0.982±0.10 1.977±0.95 4.419±1.36 0.407±0.29 1.194±0.27 0.277±0.11 5.998±1.32 0.196±0.10 2.788±0.82 2.233±0.72 7.805±7.65
ENSMUSG00000065319 ENSMUST00000083385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.018±0.00 N/A N/A

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