C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 13, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138640 FAM13A 9606 - 4:88725955-89111398 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264344 FAM13A-022 88725955-89057172 protein_coding
  ENST00000395002 FAM13A-001 88725955-88823361 protein_coding
  ENST00000502459 FAM13A-011 88767983-89111398 processed_transcript
  ENST00000502914 FAM13A-015 88758790-88768414 retained_intron
  ENST00000503556 FAM13A-006 88727426-88823231 protein_coding
  ENST00000504229 FAM13A-018 88731362-88732559 retained_intron
  ENST00000504836 FAM13A-002 88731398-88823258 nonsense_mediated_decay
  ENST00000506433 FAM13A-020 88731329-88736634 processed_transcript
  ENST00000506913 FAM13A-013 89020530-89029900 protein_coding
  ENST00000507352 FAM13A-007 88748952-88823204 nonsense_mediated_decay
  ENST00000508360 FAM13A-017 88731833-88749867 retained_intron
  ENST00000508369 FAM13A-024 88727655-88823201 protein_coding
  ENST00000509094 FAM13A-004 88936283-89057162 protein_coding
  ENST00000509478 FAM13A-009 88727069-88732021 retained_intron
  ENST00000511145 FAM13A-014 88855510-88936422 processed_transcript
  ENST00000511573 FAM13A-003 88727069-88759469 retained_intron
  ENST00000511623 FAM13A-019 88732122-88737639 retained_intron
  ENST00000511976 FAM13A-023 88727429-89057160 protein_coding
  ENST00000512339 FAM13A-012 88855367-89057150 nonsense_mediated_decay
  ENST00000513837 FAM13A-005 88728179-88823230 protein_coding
  ENST00000515155 FAM13A-016 88750446-88759166 retained_intron
  ENST00000515600 FAM13A-010 88989624-89057345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264344ENST00000395002ENST00000503556ENST00000507352ENST00000508369ENST00000511573ENST00000511976ENST00000515155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264344 N/A 1.403±0.00 N/A 1.041±0.00 0.969±0.00 1.672±0.12 N/A 1.750±0.00 2.690±0.00 N/A 0.503±0.00 1.907±0.87 1.380±0.46 1.341±0.39
ENST00000395002 2.470±0.00 2.240±0.00 N/A 1.725±0.00 2.744±0.00 N/A 1.107±0.05 N/A N/A N/A N/A 2.201±1.37 1.741±0.39 1.638±0.00
ENST00000503556 N/A N/A 3.738±0.00 2.890±0.00 3.364±0.00 3.887±0.00 1.714±0.00 2.927±0.00 6.455±0.00 4.890±3.04 1.008±0.00 1.778±0.00 N/A 1.396±0.00
ENST00000507352 N/A N/A N/A N/A N/A 6.606±0.00 N/A N/A N/A 13.518±0.00 N/A 5.282±0.00 N/A N/A
ENST00000508369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.515±0.00 N/A N/A
ENST00000511573 N/A N/A 3.176±0.00 N/A 2.077±0.00 N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A
ENST00000511976 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.955±0.00 N/A N/A N/A
ENST00000515155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.640±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KJ CIL_0000KJ_0001 CGP 4:88695915-89111398
CIL_0000KM CIL_0000KM_0001 CGP 4:88725955-89114899

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075564 fam13a family with sequence similarity 13, member A protein_coding Danio_rerio
ENSMUSG00000037709 Fam13a family with sequence similarity 13, member A protein_coding Mus_musculus

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