C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177432-ENSG00000138640 CGP 9606 4:88695915-89111398
GeneTranscriptPositionBiotype
ENSG00000138640 (FAM13A)
family with sequence similarity 13, member A 		ENST00000264344 (FAM13A-022) 88725955-89057172 protein_coding
ENST00000395002 (FAM13A-001) 88725955-88823361 protein_coding
ENST00000502459 (FAM13A-011) 88767983-89111398 processed_transcript
ENST00000502914 (FAM13A-015) 88758790-88768414 retained_intron
ENST00000503556 (FAM13A-006) 88727426-88823231 protein_coding
ENST00000504229 (FAM13A-018) 88731362-88732559 retained_intron
ENST00000504836 (FAM13A-002) 88731398-88823258 nonsense_mediated_decay
ENST00000506433 (FAM13A-020) 88731329-88736634 processed_transcript
ENST00000506913 (FAM13A-013) 89020530-89029900 protein_coding
ENST00000507352 (FAM13A-007) 88748952-88823204 nonsense_mediated_decay
ENST00000508360 (FAM13A-017) 88731833-88749867 retained_intron
ENST00000508369 (FAM13A-024) 88727655-88823201 protein_coding
ENST00000509094 (FAM13A-004) 88936283-89057162 protein_coding
ENST00000509478 (FAM13A-009) 88727069-88732021 retained_intron
ENST00000511145 (FAM13A-014) 88855510-88936422 processed_transcript
ENST00000511573 (FAM13A-003) 88727069-88759469 retained_intron
ENST00000511623 (FAM13A-019) 88732122-88737639 retained_intron
ENST00000511976 (FAM13A-023) 88727429-89057160 protein_coding
ENST00000512339 (FAM13A-012) 88855367-89057150 nonsense_mediated_decay
ENST00000513837 (FAM13A-005) 88728179-88823230 protein_coding
ENST00000515155 (FAM13A-016) 88750446-88759166 retained_intron
ENST00000515600 (FAM13A-010) 88989624-89057345 protein_coding
ENSG00000138641 (HERC3)
HECT and RLD domain containing E3 ubiquitin protein ligase 3 		ENST00000264345 (HERC3-201) 88605794-88708541 protein_coding
ENST00000402738 (HERC3-001) 88592423-88708542 protein_coding
ENST00000407637 (HERC3-002) 88592496-88657434 protein_coding
ENST00000422770 (HERC3-004) 88592484-88649895 protein_coding
ENST00000426683 (HERC3-005) 88593251-88649998 protein_coding
ENST00000431413 (HERC3-003) 88592434-88652020 protein_coding
ENST00000452979 (HERC3-006) 88593378-88653088 protein_coding
ENST00000470815 (HERC3-007) 88658268-88670202 retained_intron
ENST00000504994 (HERC3-008) 88667456-88668653 processed_transcript
ENST00000512194 (HERC3-009) 88670139-88687299 protein_coding
ENST00000513325 (HERC3-010) 88523810-88649847 protein_coding
ENST00000597259 (HERC3-012) 88523856-88524991 processed_transcript
ENST00000598772 (HERC3-011) 88523826-88524983 processed_transcript
ENST00000601319 (HERC3-013) 88521048-88523813 processed_transcript
ENSG00000177432 (NAP1L5)
nucleosome assembly protein 1-like 5 		ENST00000323061 (NAP1L5-001) 88695915-88698235 protein_coding
ENSG00000248019 (FAM13A-AS1)
FAM13A antisense RNA 1 		ENST00000500765 (FAM13A-AS1-002) 88709789-88730103 antisense
ENST00000511543 (FAM13A-AS1-001) 88721715-88728686 antisense
CIL_0000KJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055430-ENSMUSG00000037709 CGP 10090 6:58905234-59024549
GeneTranscriptPositionBiotype
ENSMUSG00000029804 (Herc3)
hect domain and RLD 3 		ENSMUST00000031823 (Herc3-002) 58831861-58904081 protein_coding
ENSMUST00000041401 (Herc3-001) 58833700-58920398 protein_coding
ENSMUST00000122908 (Herc3-007) 58871774-58873842 processed_transcript
ENSMUST00000122981 (Herc3-004) 58831503-58843714 protein_coding
ENSMUST00000126292 (Herc3-005) 58831748-58854878 protein_coding
ENSMUST00000131132 (Herc3-008) 58907262-58916823 processed_transcript
ENSMUST00000141600 (Herc3-003) 58831465-58843728 protein_coding
ENSMUST00000154290 (Herc3-006) 58862829-58873745 processed_transcript
ENSMUSG00000037709 (Fam13a)
family with sequence similarity 13, member A 		ENSMUST00000089860 (Fam13a-001) 58932090-59024549 protein_coding
ENSMUST00000173193 (Fam13a-004) 58935585-59024340 protein_coding
ENSMUST00000173712 (Fam13a-002) 58983889-59024422 processed_transcript
ENSMUST00000174307 (Fam13a-003) 59003114-59024504 retained_intron
ENSMUSG00000055430 (Nap1l5)
nucleosome assembly protein 1-like 5 		ENSMUST00000059539 (Nap1l5-201) 58905234-58907126 protein_coding
ENSMUSG00000092323 (BB365896)
expressed sequence BB365896 		ENSMUST00000173978 (BB365896-001) 58965655-59002083 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KJ_0001ENSG00000138640ENST00000264344ENST00000395002ENST00000503556ENST00000507352ENST00000508369ENST00000511573ENST00000511976ENST00000515155ENSG00000138641ENST00000264345ENST00000402738ENST00000407637ENST00000601319ENSG00000177432ENST00000323061ENSG00000248019ENST00000500765CIL_0000KJ_0002ENSMUSG00000029804ENSMUST00000031823ENSMUST00000041401ENSMUST00000122981ENSMUST00000126292ENSMUSG00000037709ENSMUST00000089860ENSMUST00000173193ENSMUSG00000055430ENSMUST00000059539ENSMUSG00000092323ENSMUST00000173978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138640 ENST00000264344 N/A 1.403±0.00 N/A 1.041±0.00 0.969±0.00 1.672±0.12 N/A 1.750±0.00 2.690±0.00 N/A 0.503±0.00 1.907±0.87 1.380±0.46 1.341±0.39
ENST00000395002 2.470±0.00 2.240±0.00 N/A 1.725±0.00 2.744±0.00 N/A 1.107±0.05 N/A N/A N/A N/A 2.201±1.37 1.741±0.39 1.638±0.00
ENST00000502459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503556 N/A N/A 3.738±0.00 2.890±0.00 3.364±0.00 3.887±0.00 1.714±0.00 2.927±0.00 6.455±0.00 4.890±3.04 1.008±0.00 1.778±0.00 N/A 1.396±0.00
ENST00000504229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507352 N/A N/A N/A N/A N/A 6.606±0.00 N/A N/A N/A 13.518±0.00 N/A 5.282±0.00 N/A N/A
ENST00000508360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.515±0.00 N/A N/A
ENST00000509094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511573 N/A N/A 3.176±0.00 N/A 2.077±0.00 N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A
ENST00000511623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511976 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.955±0.00 N/A N/A N/A
ENST00000512339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.640±0.00 N/A N/A N/A
ENST00000515600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138641 ENST00000264345 2.096±0.00 2.887±0.00 N/A 4.256±1.13 2.286±0.80 3.620±0.00 3.994±1.33 3.890±0.39 2.753±1.78 3.686±1.30 2.679±0.21 2.931±0.07 3.415±0.49 2.662±0.00
ENST00000402738 2.601±0.00 2.113±0.00 3.464±0.00 3.514±0.46 1.435±0.00 2.030±0.00 3.279±0.00 2.411±0.00 1.664±0.00 2.580±0.00 0.987±0.00 3.572±0.00 2.492±0.62 N/A
ENST00000407637 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.084±0.00 N/A N/A N/A N/A
ENST00000422770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601319 25.660±0.00 32.979±0.00 4.878±0.00 18.117±7.95 17.919±11.59 21.327±15.63 11.943±9.34 19.835±10.93 13.527±4.48 19.902±13.81 8.769±3.19 17.486±12.98 32.280±14.82 23.702±10.32
ENSG00000177432 ENST00000323061 2.532±0.00 2.901±0.00 0.541±0.00 29.885±15.54 1.617±0.80 2.346±1.71 0.946±0.42 1.535±1.23 1.269±0.10 1.789±0.36 0.333±0.25 3.549±3.12 1.965±0.33 3.399±1.47
ENSG00000248019 ENST00000500765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.640±0.00 N/A N/A N/A
ENST00000511543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029804 ENSMUST00000031823 N/A N/A N/A 1.455±0.00 N/A N/A N/A N/A N/A N/A N/A 1.098±0.00 N/A N/A
ENSMUST00000041401 1.753±0.09 1.924±0.31 1.609±1.17 9.219±1.84 3.153±1.06 1.505±0.32 4.989±1.97 3.856±0.71 0.870±0.35 1.509±0.54 5.994±3.82 7.831±1.19 2.659±1.38 0.542±0.27
ENSMUST00000122908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122981 N/A 3.701±1.38 N/A N/A N/A 2.163±0.64 N/A N/A N/A N/A N/A 4.489±0.00 N/A N/A
ENSMUST00000126292 N/A N/A N/A 90.974±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037709 ENSMUST00000089860 11.904±2.10 9.281±1.73 0.438±0.13 1.276±0.27 14.576±1.05 4.927±0.58 2.444±0.40 12.704±0.62 1.395±1.05 5.315±1.04 1.305±0.44 14.230±3.84 0.222±0.15 0.142±0.06
ENSMUST00000173193 N/A N/A N/A 7.983±0.00 N/A N/A N/A N/A N/A N/A 0.583±0.08 27.450±25.85 0.361±0.32 0.512±0.00
ENSMUST00000173712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055430 ENSMUST00000059539 1.171±0.36 14.215±5.33 2.018±0.22 47.900±11.27 0.889±0.70 5.413±1.20 0.606±0.04 5.267±2.82 0.138±0.02 0.591±0.13 0.158±0.01 67.985±30.53 0.361±0.24 0.153±0.04
ENSMUSG00000092323 ENSMUST00000173978 0.057±0.04 0.060±0.00 0.012±0.01 0.018±0.00 0.067±0.04 0.052±0.00 0.015±0.00 0.107±0.03 0.064±0.08 0.046±0.03 0.019±0.01 0.136±0.07 0.020±0.01 0.002±0.00

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