C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138640-ENSG00000180346 CGP 9606 4:88725955-89114899
GeneTranscriptPositionBiotype
ENSG00000138640 (FAM13A)
family with sequence similarity 13, member A 		ENST00000264344 (FAM13A-022) 88725955-89057172 protein_coding
ENST00000395002 (FAM13A-001) 88725955-88823361 protein_coding
ENST00000502459 (FAM13A-011) 88767983-89111398 processed_transcript
ENST00000502914 (FAM13A-015) 88758790-88768414 retained_intron
ENST00000503556 (FAM13A-006) 88727426-88823231 protein_coding
ENST00000504229 (FAM13A-018) 88731362-88732559 retained_intron
ENST00000504836 (FAM13A-002) 88731398-88823258 nonsense_mediated_decay
ENST00000506433 (FAM13A-020) 88731329-88736634 processed_transcript
ENST00000506913 (FAM13A-013) 89020530-89029900 protein_coding
ENST00000507352 (FAM13A-007) 88748952-88823204 nonsense_mediated_decay
ENST00000508360 (FAM13A-017) 88731833-88749867 retained_intron
ENST00000508369 (FAM13A-024) 88727655-88823201 protein_coding
ENST00000509094 (FAM13A-004) 88936283-89057162 protein_coding
ENST00000509478 (FAM13A-009) 88727069-88732021 retained_intron
ENST00000511145 (FAM13A-014) 88855510-88936422 processed_transcript
ENST00000511573 (FAM13A-003) 88727069-88759469 retained_intron
ENST00000511623 (FAM13A-019) 88732122-88737639 retained_intron
ENST00000511976 (FAM13A-023) 88727429-89057160 protein_coding
ENST00000512339 (FAM13A-012) 88855367-89057150 nonsense_mediated_decay
ENST00000513837 (FAM13A-005) 88728179-88823230 protein_coding
ENST00000515155 (FAM13A-016) 88750446-88759166 retained_intron
ENST00000515600 (FAM13A-010) 88989624-89057345 protein_coding
ENSG00000180346 (TIGD2)
tigger transposable element derived 2 		ENST00000317005 (TIGD2-001) 89112817-89114899 protein_coding
ENSG00000248019 (FAM13A-AS1)
FAM13A antisense RNA 1 		ENST00000500765 (FAM13A-AS1-002) 88709789-88730103 antisense
ENST00000511543 (FAM13A-AS1-001) 88721715-88728686 antisense
ENSG00000271359 (RP11-84C13.1)
 ENST00000603357 (RP11-84C13.1-001) 89111500-89112368 lincRNA
CIL_0000KM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037709-ENSMUSG00000049232 CGP 10090 6:58932090-59212033
GeneTranscriptPositionBiotype
ENSMUSG00000037709 (Fam13a)
family with sequence similarity 13, member A 		ENSMUST00000089860 (Fam13a-001) 58932090-59024549 protein_coding
ENSMUST00000173193 (Fam13a-004) 58935585-59024340 protein_coding
ENSMUST00000173712 (Fam13a-002) 58983889-59024422 processed_transcript
ENSMUST00000174307 (Fam13a-003) 59003114-59024504 retained_intron
ENSMUSG00000049232 (Tigd2)
tigger transposable element derived 2 		ENSMUST00000062626 (Tigd2-001) 59208870-59212033 protein_coding
ENSMUSG00000092323 (BB365896)
expressed sequence BB365896 		ENSMUST00000173978 (BB365896-001) 58965655-59002083 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KM_0001ENSG00000138640ENST00000264344ENST00000395002ENST00000502459ENST00000502914ENST00000503556ENST00000504229ENST00000504836ENST00000506433ENST00000506913ENST00000507352ENST00000508360ENST00000508369ENST00000509094ENST00000509478ENST00000511145ENST00000511573ENST00000511623ENST00000511976ENST00000512339ENST00000513837ENST00000515155ENST00000515600ENSG00000180346ENST00000317005ENSG00000248019ENST00000500765ENST00000511543ENSG00000271359ENST00000603357CIL_0000KM_0002ENSMUSG00000037709ENSMUST00000089860ENSMUST00000173193ENSMUST00000173712ENSMUST00000174307ENSMUSG00000049232ENSMUST00000062626ENSMUSG00000092323ENSMUST00000173978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KM_0001ENSG00000138640ENST00000264344ENST00000395002ENST00000503556ENST00000507352ENST00000508369ENST00000511573ENST00000511976ENST00000515155ENSG00000180346ENST00000317005ENSG00000248019ENST00000500765ENSG00000271359ENST00000603357CIL_0000KM_0002ENSMUSG00000037709ENSMUST00000089860ENSMUST00000173193ENSMUSG00000049232ENSMUST00000062626ENSMUSG00000092323ENSMUST00000173978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138640 ENST00000264344 N/A 1.403±0.00 N/A 1.041±0.00 0.969±0.00 1.672±0.12 N/A 1.750±0.00 2.690±0.00 N/A 0.503±0.00 1.907±0.87 1.380±0.46 1.341±0.39
ENST00000395002 2.470±0.00 2.240±0.00 N/A 1.725±0.00 2.744±0.00 N/A 1.107±0.05 N/A N/A N/A N/A 2.201±1.37 1.741±0.39 1.638±0.00
ENST00000502459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503556 N/A N/A 3.738±0.00 2.890±0.00 3.364±0.00 3.887±0.00 1.714±0.00 2.927±0.00 6.455±0.00 4.890±3.04 1.008±0.00 1.778±0.00 N/A 1.396±0.00
ENST00000504229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507352 N/A N/A N/A N/A N/A 6.606±0.00 N/A N/A N/A 13.518±0.00 N/A 5.282±0.00 N/A N/A
ENST00000508360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.515±0.00 N/A N/A
ENST00000509094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511573 N/A N/A 3.176±0.00 N/A 2.077±0.00 N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A
ENST00000511623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511976 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.955±0.00 N/A N/A N/A
ENST00000512339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.640±0.00 N/A N/A N/A
ENST00000515600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180346 ENST00000317005 0.745±0.00 1.342±0.00 N/A 0.649±0.00 1.542±0.27 0.579±0.08 0.286±0.03 1.895±0.00 1.230±0.42 0.434±0.00 0.472±0.23 1.426±1.18 N/A 1.884±0.00
ENSG00000248019 ENST00000500765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.640±0.00 N/A N/A N/A
ENST00000511543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271359 ENST00000603357 0.487±0.00 1.010±0.00 N/A 0.265±0.00 N/A 0.628±0.13 0.488±0.00 0.810±0.00 1.013±0.00 0.516±0.00 1.447±1.25 1.313±0.00 N/A 0.647±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037709 ENSMUST00000089860 11.904±2.10 9.281±1.73 0.438±0.13 1.276±0.27 14.576±1.05 4.927±0.58 2.444±0.40 12.704±0.62 1.395±1.05 5.315±1.04 1.305±0.44 14.230±3.84 0.222±0.15 0.142±0.06
ENSMUST00000173193 N/A N/A N/A 7.983±0.00 N/A N/A N/A N/A N/A N/A 0.583±0.08 27.450±25.85 0.361±0.32 0.512±0.00
ENSMUST00000173712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049232 ENSMUST00000062626 2.082±0.34 9.964±1.20 2.596±0.33 1.746±0.73 5.456±2.11 3.694±0.46 1.412±0.26 2.078±0.31 1.980±0.65 3.798±0.68 3.085±0.30 4.634±0.93 1.832±0.49 1.345±0.19
ENSMUSG00000092323 ENSMUST00000173978 0.057±0.04 0.060±0.00 0.012±0.01 0.018±0.00 0.067±0.04 0.052±0.00 0.015±0.00 0.107±0.03 0.064±0.08 0.046±0.03 0.019±0.01 0.136±0.07 0.020±0.01 0.002±0.00

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