C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC31 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138674 SEC31A 9606 - 4:82818661-82901166 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264405 SEC31A-011 82819022-82871950 protein_coding
  ENST00000311785 SEC31A-201 82818662-82891259 protein_coding
  ENST00000348405 SEC31A-002 82818661-82891136 protein_coding
  ENST00000355196 SEC31A-003 82819011-82900538 protein_coding
  ENST00000395310 SEC31A-001 82818661-82891266 protein_coding
  ENST00000436790 SEC31A-006 82863211-82891184 processed_transcript
  ENST00000443462 SEC31A-007 82818662-82891178 protein_coding
  ENST00000448323 SEC31A-202 82818662-82891266 protein_coding
  ENST00000500777 SEC31A-013 82818672-82881940 protein_coding
  ENST00000503058 SEC31A-023 82871933-82891120 protein_coding
  ENST00000503210 SEC31A-039 82878888-82901166 protein_coding
  ENST00000503226 SEC31A-032 82854906-82857998 retained_intron
  ENST00000503937 SEC31A-014 82818661-82844460 protein_coding
  ENST00000505434 SEC31A-024 82880804-82891102 protein_coding
  ENST00000505472 SEC31A-012 82818672-82881937 protein_coding
  ENST00000505479 SEC31A-038 82819038-82821451 retained_intron
  ENST00000505984 SEC31A-010 82819044-82891148 protein_coding
  ENST00000506495 SEC31A-040 82881857-82900569 protein_coding
  ENST00000506497 SEC31A-022 82877557-82891133 processed_transcript
  ENST00000507051 SEC31A-041 82881902-82900569 protein_coding
  ENST00000507340 SEC31A-016 82875785-82891240 nonsense_mediated_decay
  ENST00000507676 SEC31A-042 82880807-82900538 protein_coding
  ENST00000507816 SEC31A-017 82874698-82891205 nonsense_mediated_decay
  ENST00000507828 SEC31A-028 82848826-82866931 protein_coding
  ENST00000507867 SEC31A-019 82877489-82891178 processed_transcript
  ENST00000508479 SEC31A-008 82843685-82891153 protein_coding
  ENST00000508502 SEC31A-005 82819011-82891203 protein_coding
  ENST00000509142 SEC31A-004 82818662-82891214 protein_coding
  ENST00000509691 SEC31A-036 82827556-82829413 retained_intron
  ENST00000510167 SEC31A-029 82853631-82864598 protein_coding
  ENST00000510310 SEC31A-015 82878776-82891261 processed_transcript
  ENST00000511338 SEC31A-033 82824598-82848843 protein_coding
  ENST00000511975 SEC31A-020 82875772-82891178 processed_transcript
  ENST00000512664 SEC31A-030 82851514-82864455 protein_coding
  ENST00000512732 SEC31A-031 82854950-82861846 retained_intron
  ENST00000513323 SEC31A-026 82875731-82891018 protein_coding
  ENST00000513858 SEC31A-009 82818661-82891153 protein_coding
  ENST00000514326 SEC31A-025 82875727-82891095 protein_coding
  ENST00000514362 SEC31A-035 82827500-82831361 retained_intron
  ENST00000515062 SEC31A-037 82819021-82827612 protein_coding
  ENST00000515749 SEC31A-034 82827548-82842824 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311785ENST00000348405ENST00000395310ENST00000443462ENST00000448323ENST00000500777ENST00000503937ENST00000507828ENST00000508479ENST00000508502ENST00000509142ENST00000513858
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311785 N/A N/A N/A N/A N/A 10.234±0.00 N/A N/A 8.374±0.00 N/A N/A 17.167±9.71 12.574±2.67 11.299±0.00
ENST00000348405 N/A N/A N/A N/A N/A N/A 6.627±0.00 8.010±1.07 3.428±0.00 N/A N/A 10.592±4.17 14.376±0.00 16.158±0.00
ENST00000395310 N/A N/A N/A 6.647±0.00 9.041±0.00 8.462±0.00 2.089±0.00 5.652±0.00 6.113±0.00 10.765±0.65 N/A 14.950±8.93 N/A N/A
ENST00000443462 21.606±0.00 6.264±0.00 N/A 9.967±0.00 10.866±0.00 9.644±0.00 3.264±0.00 8.975±0.00 N/A N/A 8.967±0.00 N/A N/A 10.964±0.00
ENST00000448323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.038±0.00 N/A N/A N/A
ENST00000500777 N/A N/A N/A N/A N/A N/A 4.352±0.00 N/A 4.163±0.00 11.271±0.00 N/A N/A 11.144±1.52 N/A
ENST00000503937 N/A 24.103±0.00 N/A 13.536±0.00 23.819±0.00 16.943±0.00 12.711±0.00 38.459±0.00 28.741±0.00 34.590±0.00 31.679±0.00 68.639±14.89 29.740±6.84 30.192±0.00
ENST00000507828 N/A N/A 9.166±0.00 N/A N/A N/A N/A N/A N/A N/A 5.102±0.00 25.856±0.00 70.612±0.00 38.508±0.00
ENST00000508479 N/A N/A 3.468±0.00 N/A 10.225±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508502 N/A N/A N/A 6.052±0.51 N/A 10.721±0.00 4.331±0.85 N/A 7.968±0.00 N/A 7.202±4.77 N/A N/A N/A
ENST00000509142 N/A 9.691±0.00 N/A N/A 9.345±0.34 N/A N/A N/A N/A N/A N/A 18.096±11.35 11.276±0.13 14.795±0.00
ENST00000513858 17.511±0.00 7.126±0.00 N/A N/A 8.280±0.00 7.994±0.00 N/A 10.725±0.00 3.558±0.00 15.282±0.00 N/A 16.641±0.00 24.166±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006888 NAS ER to Golgi vesicle-mediated transport
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0015031 IEA protein transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030120 IDA vesicle coat
GO:0030127 NAS COPII vesicle coat
GO:0030134 IDA ER to Golgi transport vesicle
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0048306 IPI calcium-dependent protein binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051592 IDA response to calcium ion
GO:0061024 TAS membrane organization
GO:0070971 IEA endoplasmic reticulum exit site

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021082 sec31a sec31 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035325 Sec31a Sec31 homolog A (S. cerevisiae) protein_coding Mus_musculus

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