C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: beta-1,4-N-acetyl-galactosaminyl transferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139044 B4GALNT3 9606 + 12:460364-563509 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266383 B4GALNT3-001 460364-563509 protein_coding
  ENST00000322843 B4GALNT3-008 543133-555430 protein_coding
  ENST00000535402 B4GALNT3-006 552075-563498 retained_intron
  ENST00000535680 B4GALNT3-002 460470-546828 retained_intron
  ENST00000540836 B4GALNT3-005 543118-545404 retained_intron
  ENST00000544638 B4GALNT3-007 540463-548301 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000266383ENST00000322843ENST00000535402ENST00000535680
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000266383 0.290±0.00 0.289±0.00 0.784±0.00 0.506±0.09 0.272±0.00 3.540±0.00 0.062±0.00 N/A 0.168±0.00 2.901±2.73 0.145±0.00 1.173±0.00
ENST00000322843 N/A N/A N/A N/A 1.983±0.00 0.405±0.00 N/A N/A N/A 0.864±0.00 N/A N/A
ENST00000535402 0.155±0.00 N/A 0.224±0.00 0.180±0.00 0.601±0.34 1.162±0.00 N/A 0.955±0.54 N/A 1.922±1.97 0.108±0.00 2.413±0.00
ENST00000535680 N/A N/A N/A N/A N/A 1.322±0.00 N/A N/A 1.124±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490
CIL_0008AW CIL_0008AW_0001 VISTA 12:291137-892234

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 IDA:IEA acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0032580 IEA Golgi cisterna membrane
GO:0033842 IEA N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058939 b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b protein_coding Danio_rerio
ENSDARG00000077484 B4GALNT3 (2 of 3) beta-1,4-N-acetyl-galactosaminyl transferase 3 protein_coding Danio_rerio
ENSDARG00000078749 b4galnt3a beta-1,4-N-acetyl-galactosaminyl transferase 3a protein_coding Danio_rerio
ENSMUSG00000041372 B4galnt3 beta-1,4-N-acetyl-galactosaminyl transferase 3 protein_coding Mus_musculus

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