C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GABA(A) receptor-associated protein like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139112 GABARAPL1 9606 + 12:10212458-10223130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266458 GABARAPL1-001 10212805-10223130 protein_coding
  ENST00000421801 GABARAPL1-002 10212836-10220831 protein_coding
  ENST00000535576 GABARAPL1-014 10213440-10221852 protein_coding
  ENST00000537201 GABARAPL1-009 10212922-10214689 nonsense_mediated_decay
  ENST00000539170 GABARAPL1-005 10213440-10223110 protein_coding
  ENST00000539289 GABARAPL1-019 10213429-10220525 processed_transcript
  ENST00000539408 GABARAPL1-010 10212458-10214123 nonsense_mediated_decay
  ENST00000540424 GABARAPL1-003 10212897-10223123 nonsense_mediated_decay
  ENST00000541453 GABARAPL1-012 10212877-10221908 nonsense_mediated_decay
  ENST00000541960 GABARAPL1-020 10213106-10223128 nonsense_mediated_decay
  ENST00000542722 GABARAPL1-017 10212509-10222087 nonsense_mediated_decay
  ENST00000543602 GABARAPL1-018 10212883-10220778 protein_coding
  ENST00000544284 GABARAPL1-008 10212854-10221950 protein_coding
  ENST00000545047 GABARAPL1-021 10212877-10220655 protein_coding
  ENST00000545290 GABARAPL1-015 10213629-10221799 protein_coding
  ENST00000545859 GABARAPL1-011 10212597-10220481 protein_coding
  ENST00000545887 GABARAPL1-013 10212928-10221969 protein_coding
  ENST00000546017 GABARAPL1-004 10213429-10223123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266458ENST00000421801ENST00000539170ENST00000541960ENST00000545887ENST00000546017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266458 91.808±0.00 11.088±0.00 7.460±0.00 62.318±11.07 20.429±17.34 28.909±26.33 67.529±54.78 72.324±53.55 13.457±6.39 77.351±72.32 33.262±19.59 20.170±14.51 126.831±17.52 13.260±3.59
ENST00000421801 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.942±0.00 N/A N/A N/A N/A
ENST00000539170 N/A N/A N/A N/A N/A N/A N/A 41.406±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541960 N/A N/A 2.184±0.00 N/A 1.182±0.00 N/A N/A N/A N/A 1.491±0.00 N/A 1.693±0.00 N/A N/A
ENST00000545887 N/A N/A N/A 55.355±0.00 6.156±0.00 N/A 27.655±0.00 N/A N/A N/A 24.911±0.00 N/A N/A N/A
ENST00000546017 N/A N/A 3.700±0.00 N/A 3.499±0.00 1.381±0.00 5.060±0.00 N/A 8.182±0.00 5.623±0.00 N/A 2.205±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000T9 CIL_0000T9_0001 CGP 12:10170542-10223130

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005874 IEA microtubule
GO:0006914 IEA autophagy
GO:0031410 IEA cytoplasmic vesicle
GO:0032590 IEA dendrite membrane
GO:0032839 IEA dendrite cytoplasm
GO:0044297 IEA cell body
GO:0048487 ISS beta-tubulin binding
GO:0050811 ISS GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040971 GABARAPL1 GABA(A) receptor-associated protein like 1 protein_coding Danio_rerio
ENSMUSG00000030161 Gabarapl1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 protein_coding Mus_musculus

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