C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and immunoglobulin-like domains 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139263 LRIG3 9606 - 12:58872149-58920522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320743 LRIG3-002 58872149-58920522 protein_coding
  ENST00000379141 LRIG3-001 58872149-58919546 protein_coding
  ENST00000433272 LRIG3-003 58872548-58920434 nonsense_mediated_decay
  ENST00000547329 LRIG3-009 58880360-58882886 retained_intron
  ENST00000548968 LRIG3-005 58913495-58920156 retained_intron
  ENST00000550304 LRIG3-010 58885880-58887035 retained_intron
  ENST00000550825 LRIG3-008 58873551-58874572 protein_coding
  ENST00000552267 LRIG3-006 58888874-58914583 protein_coding
  ENST00000552646 LRIG3-007 58874053-58877494 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320743ENST00000379141ENST00000433272ENST00000552267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320743 0.936±0.00 1.202±0.00 N/A 0.221±0.00 1.937±0.00 3.055±1.29 0.351±0.13 1.756±0.00 1.696±1.08 0.628±0.00 0.222±0.00 3.344±1.41 1.688±0.30 1.530±0.00
ENST00000379141 0.670±0.00 1.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.83 1.063±0.00 0.193±0.00
ENST00000433272 1.522±0.00 2.798±0.00 0.594±0.00 0.287±0.06 1.934±0.85 2.021±0.00 0.436±0.00 0.986±0.26 1.269±1.02 2.014±0.00 0.562±0.13 1.036±0.12 1.349±0.68 1.262±0.80
ENST00000552267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007V1 CIL_0007V1_0001 VISTA 12:58667849-59270737
CIL_0008TE CIL_0008TE_0001 VISTA 12:58766409-59368586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0032474 IEA otolith morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079363 LRIG3 leucine-rich repeats and immunoglobulin-like domains 3 protein_coding Danio_rerio
ENSMUSG00000020105 Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 protein_coding Mus_musculus

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