C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008TE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1427 VISTA 9606 12:58766409-59368586
GeneTranscriptPositionBiotype
ENSG00000139263 (LRIG3)
leucine-rich repeats and immunoglobulin-like domains 3 		ENST00000320743 (LRIG3-002) 58872149-58920522 protein_coding
ENST00000379141 (LRIG3-001) 58872149-58919546 protein_coding
ENST00000433272 (LRIG3-003) 58872548-58920434 nonsense_mediated_decay
ENST00000547329 (LRIG3-009) 58880360-58882886 retained_intron
ENST00000548968 (LRIG3-005) 58913495-58920156 retained_intron
ENST00000550304 (LRIG3-010) 58885880-58887035 retained_intron
ENST00000550825 (LRIG3-008) 58873551-58874572 protein_coding
ENST00000552267 (LRIG3-006) 58888874-58914583 protein_coding
ENST00000552646 (LRIG3-007) 58874053-58877494 retained_intron
ENSG00000244390 (RPS6P22)
ribosomal protein S6 pseudogene 22 		ENST00000497406 (RPS6P22-001) 59020169-59020894 processed_pseudogene
ENSG00000257259 (RP11-767I20.1)
 ENST00000550678 (RP11-767I20.1-001) 58565960-58781716 lincRNA
ENST00000552201 (RP11-767I20.1-002) 58712184-58781747 lincRNA
ENSG00000257288 (RP11-557F20.2)
 ENST00000550567 (RP11-557F20.2-001) 59052980-59054184 processed_pseudogene
ENSG00000257443 (RP11-150C16.1)
 ENST00000547590 (RP11-150C16.1-001) 58920639-59064238 antisense
ENSG00000258231 (RP11-362K2.2)
 ENST00000546977 (RP11-362K2.2-001) 58544124-58813060 lincRNA
ENST00000548576 (RP11-362K2.2-002) 58591702-58812667 lincRNA
ENST00000548969 (RP11-362K2.2-004) 58800372-58812659 lincRNA
ENST00000552519 (RP11-362K2.2-003) 58800661-58812659 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0008TE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1427 VISTA 10090 10:125509054-126111061
GeneTranscriptPositionBiotype
ENSMUSG00000020105 (Lrig3)
leucine-rich repeats and immunoglobulin-like domains 3 		ENSMUST00000074807 (Lrig3-201) 125966219-126015359 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TE_0001ENSG00000139263ENST00000320743ENST00000379141ENST00000433272ENST00000547329ENST00000548968ENST00000550304ENST00000550825ENST00000552267ENST00000552646ENSG00000244390ENST00000497406ENSG00000257259ENST00000550678ENST00000552201ENSG00000257288ENST00000550567ENSG00000257443ENST00000547590ENSG00000258231ENST00000546977ENST00000548576ENST00000548969ENST00000552519CIL_0008TE_0002ENSMUSG00000020105ENSMUST00000074807
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TE_0001ENSG00000139263ENST00000320743ENST00000379141ENST00000433272ENST00000552267ENSG00000244390ENST00000497406ENSG00000257259ENST00000550678ENST00000552201ENSG00000257288ENST00000550567ENSG00000257443ENST00000547590ENSG00000258231ENST00000546977ENST00000548576ENST00000548969CIL_0008TE_0002ENSMUSG00000020105ENSMUST00000074807
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139263 ENST00000320743 0.936±0.00 1.202±0.00 N/A 0.221±0.00 1.937±0.00 3.055±1.29 0.351±0.13 1.756±0.00 1.696±1.08 0.628±0.00 0.222±0.00 3.344±1.41 1.688±0.30 1.530±0.00
ENST00000379141 0.670±0.00 1.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.83 1.063±0.00 0.193±0.00
ENST00000433272 1.522±0.00 2.798±0.00 0.594±0.00 0.287±0.06 1.934±0.85 2.021±0.00 0.436±0.00 0.986±0.26 1.269±1.02 2.014±0.00 0.562±0.13 1.036±0.12 1.349±0.68 1.262±0.80
ENST00000547329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A
ENST00000552646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244390 ENST00000497406 0.074±0.00 0.059±0.00 N/A 0.050±0.00 0.039±0.00 0.063±0.01 0.018±0.00 0.039±0.00 0.018±0.00 N/A 0.035±0.00 N/A N/A 0.035±0.00
ENSG00000257259 ENST00000550678 0.175±0.00 0.143±0.00 N/A 0.258±0.00 0.111±0.00 N/A 0.587±0.56 0.068±0.00 0.099±0.00 0.016±0.00 0.111±0.00 0.055±0.04 N/A 0.601±0.44
ENST00000552201 0.525±0.00 0.161±0.00 N/A N/A N/A N/A 0.919±0.85 0.158±0.00 0.137±0.00 N/A 0.322±0.00 N/A N/A 1.992±1.14
ENSG00000257288 ENST00000550567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00
ENSG00000257443 ENST00000547590 0.115±0.00 N/A 0.735±0.00 N/A N/A 0.493±0.00 0.047±0.00 N/A N/A N/A N/A 0.042±0.00 N/A 0.319±0.07
ENSG00000258231 ENST00000546977 N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00
ENST00000548576 N/A N/A N/A N/A 1.897±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.03 1.530±0.00
ENST00000548969 0.069±0.00 0.302±0.00 N/A 0.281±0.00 0.105±0.00 0.010±0.00 0.095±0.00 N/A 0.049±0.00 0.078±0.00 N/A 0.036±0.00 0.040±0.01 0.421±0.00
ENST00000552519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020105 ENSMUST00000074807 6.646±4.42 2.597±0.42 2.562±0.16 1.598±0.34 3.373±0.82 22.239±8.22 0.377±0.15 3.460±0.40 0.983±0.43 5.126±0.45 0.650±0.12 5.293±1.73 1.566±0.68 0.610±0.31

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