C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neural precursor cell expressed, developmentally down-regulated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139350 NEDD1 9606 + 12:96907223-96953777 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266742 NEDD1-001 96907223-96953777 protein_coding
  ENST00000411739 NEDD1-002 96907238-96952475 protein_coding
  ENST00000429527 NEDD1-004 96907224-96953351 protein_coding
  ENST00000457368 NEDD1-005 96912576-96953221 protein_coding
  ENST00000553609 NEDD1-011 96907257-96936638 protein_coding
  ENST00000554226 NEDD1-007 96907230-96920118 protein_coding
  ENST00000555114 NEDD1-010 96907238-96936654 processed_transcript
  ENST00000555806 NEDD1-009 96907233-96936718 nonsense_mediated_decay
  ENST00000557092 NEDD1-008 96907233-96917691 protein_coding
  ENST00000557400 NEDD1-013 96907257-96924895 processed_transcript
  ENST00000557454 NEDD1-012 96907257-96936759 processed_transcript
  ENST00000557478 NEDD1-006 96907230-96934980 protein_coding
  ENST00000557644 NEDD1-003 96907466-96952270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266742ENST00000411739ENST00000429527ENST00000457368ENST00000557454ENST00000557644
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266742 N/A N/A N/A N/A N/A N/A N/A N/A 0.884±0.00 N/A N/A 1.602±0.63 0.543±0.04 N/A
ENST00000411739 N/A N/A N/A N/A 0.732±0.00 N/A N/A 0.589±0.00 N/A N/A 0.968±0.25 0.661±0.00 0.659±0.19 2.981±0.52
ENST00000429527 2.593±0.00 N/A N/A 0.473±0.00 1.160±0.14 N/A N/A 0.687±0.00 N/A 1.681±0.30 0.380±0.00 0.550±0.00 N/A 3.666±0.00
ENST00000457368 N/A 1.433±0.00 N/A 0.151±0.00 1.034±0.00 2.554±0.00 N/A 0.294±0.00 1.430±0.00 N/A 1.041±0.00 1.718±0.83 0.650±0.34 2.662±0.00
ENST00000557454 N/A N/A N/A N/A N/A N/A N/A 3.325±0.00 N/A N/A N/A 10.781±0.00 N/A N/A
ENST00000557644 N/A N/A 1.337±0.00 0.513±0.19 N/A 2.550±0.00 1.060±0.00 N/A N/A 1.927±0.00 1.580±0.00 2.464±0.00 1.214±0.69 3.952±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UU CIL_0007UU_0001 VISTA 12:96774925-97377311

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000242 IEA pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0000922 IEA spindle pole
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IEA centriole
GO:0005829 TAS cytosol
GO:0007067 IEA mitotic nuclear division
GO:0036064 IEA ciliary basal body
GO:0045177 IEA apical part of cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013472 nedd1 neural precursor cell expressed, developmentally down-regulated 1 protein_coding Danio_rerio
ENSMUSG00000019988 Nedd1 neural precursor cell expressed, developmentally down-regulated gene 1 protein_coding Mus_musculus

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