C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007UU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1341 VISTA 9606 12:96774925-97377311
GeneTranscriptPositionBiotype
ENSG00000139350 (NEDD1)
neural precursor cell expressed, developmentally down-regulated 1 		ENST00000266742 (NEDD1-001) 96907223-96953777 protein_coding
ENST00000411739 (NEDD1-002) 96907238-96952475 protein_coding
ENST00000429527 (NEDD1-004) 96907224-96953351 protein_coding
ENST00000457368 (NEDD1-005) 96912576-96953221 protein_coding
ENST00000553609 (NEDD1-011) 96907257-96936638 protein_coding
ENST00000554226 (NEDD1-007) 96907230-96920118 protein_coding
ENST00000555114 (NEDD1-010) 96907238-96936654 processed_transcript
ENST00000555806 (NEDD1-009) 96907233-96936718 nonsense_mediated_decay
ENST00000557092 (NEDD1-008) 96907233-96917691 protein_coding
ENST00000557400 (NEDD1-013) 96907257-96924895 processed_transcript
ENST00000557454 (NEDD1-012) 96907257-96936759 processed_transcript
ENST00000557478 (NEDD1-006) 96907230-96934980 protein_coding
ENST00000557644 (NEDD1-003) 96907466-96952270 protein_coding
ENSG00000188596 (C12orf55)
cilia and flagella associated 54 		ENST00000342887 (C12orf55-009) 96647975-96765270 retained_intron
ENST00000524981 (C12orf55-003) 96489587-96875555 protein_coding
ENST00000550977 (C12orf55-004) 96621712-96647127 protein_coding
ENST00000553778 (C12orf55-002) 96489575-96538668 non_stop_decay
ENST00000554108 (C12orf55-008) 96540137-96644210 processed_transcript
ENST00000554621 (C12orf55-005) 96489571-96501201 retained_intron
ENST00000554821 (C12orf55-006) 96547927-96554968 retained_intron
ENST00000556591 (C12orf55-007) 96554187-96576698 processed_transcript
ENSG00000202368 (Y_RNA)
Y RNA 		ENST00000365498 (Y_RNA.1-561) 96979528-96979629 misc_RNA
ENSG00000257470 (RP11-397H6.1)
 ENST00000549896 (RP11-397H6.1-001) 97024021-97051129 lincRNA
ENSG00000258131 (RP11-541G9.1)
 ENST00000552238 (RP11-541G9.1-001) 96985656-97185609 lincRNA
ENSG00000258846 (EEF1A1P33)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 33 		ENST00000554413 (EEF1A1P33-001) 96900697-96902698 processed_pseudogene
ENSG00000279190 (RP11-534P6.1)
 ENST00000624902 (RP11-534P6.1-001) 97150081-97154627 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007UU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1341 VISTA 10090 10:92255726-92857808
GeneTranscriptPositionBiotype
ENSMUSG00000019988 (Nedd1)
neural precursor cell expressed, developmentally down-regulated gene 1 		ENSMUST00000020163 (Nedd1-201) 92684746-92722420 protein_coding
ENSMUSG00000020014 (4930485B16Rik)
cilia and flagella associated protein 54 		ENSMUST00000020200 (4930485B16Rik-201) 93028470-93081618 protein_coding
ENSMUST00000067705 (4930485B16Rik-002) 92897286-92940289 processed_transcript
ENSMUST00000163209 (4930485B16Rik-003) 92796753-92836346 nonsense_mediated_decay
ENSMUST00000164979 (4930485B16Rik-202) 92917290-92940297 protein_coding
ENSMUST00000165090 (4930485B16Rik-008) 93021711-93025117 processed_transcript
ENSMUST00000168080 (4930485B16Rik-004) 93061137-93081618 retained_intron
ENSMUST00000168110 (4930485B16Rik-001) 92775619-93081618 protein_coding
ENSMUST00000168617 (4930485B16Rik-007) 93035419-93081596 protein_coding
ENSMUST00000170065 (4930485B16Rik-005) 92972585-93034821 nonsense_mediated_decay
ENSMUST00000171781 (4930485B16Rik-006) 93066763-93070251 processed_transcript
ENSMUSG00000088412 (Gm24241)
predicted gene, 24241 		ENSMUST00000157787 (Gm24241-201) 92688864-92689008 snoRNA
ENSMUSG00000098040 (Gm20757)
predicted gene, 20757 		ENSMUST00000182870 (Gm20757-001) 92171301-92375373 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UU_0001ENSG00000139350ENST00000266742ENST00000411739ENST00000429527ENST00000457368ENST00000553609ENST00000554226ENST00000555114ENST00000555806ENST00000557092ENST00000557400ENST00000557454ENST00000557478ENST00000557644ENSG00000188596ENST00000342887ENST00000524981ENST00000550977ENST00000553778ENST00000554108ENST00000554621ENST00000554821ENST00000556591ENSG00000202368ENST00000365498ENSG00000257470ENST00000549896ENSG00000258131ENST00000552238ENSG00000258846ENST00000554413ENSG00000279190ENST00000624902CIL_0007UU_0002ENSMUSG00000019988ENSMUST00000020163ENSMUSG00000020014ENSMUST00000020200ENSMUST00000067705ENSMUST00000163209ENSMUST00000164979ENSMUST00000165090ENSMUST00000168080ENSMUST00000168110ENSMUST00000168617ENSMUST00000170065ENSMUST00000171781ENSMUSG00000088412ENSMUST00000157787ENSMUSG00000098040ENSMUST00000182870
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UU_0001ENSG00000139350ENST00000266742ENST00000411739ENST00000429527ENST00000457368ENST00000557454ENST00000557644ENSG00000188596ENST00000342887ENST00000524981ENST00000550977ENST00000553778ENST00000554108ENST00000554821ENSG00000202368ENST00000365498ENSG00000257470ENST00000549896ENSG00000258131ENST00000552238ENSG00000258846ENST00000554413ENSG00000279190ENST00000624902CIL_0007UU_0002ENSMUSG00000019988ENSMUST00000020163ENSMUSG00000020014ENSMUST00000020200ENSMUST00000067705ENSMUST00000163209ENSMUST00000164979ENSMUST00000168080ENSMUST00000168110ENSMUST00000168617ENSMUST00000170065ENSMUSG00000088412ENSMUST00000157787ENSMUSG00000098040ENSMUST00000182870
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139350 ENST00000266742 N/A N/A N/A N/A N/A N/A N/A N/A 0.884±0.00 N/A N/A 1.602±0.63 0.543±0.04 N/A
ENST00000411739 N/A N/A N/A N/A 0.732±0.00 N/A N/A 0.589±0.00 N/A N/A 0.968±0.25 0.661±0.00 0.659±0.19 2.981±0.52
ENST00000429527 2.593±0.00 N/A N/A 0.473±0.00 1.160±0.14 N/A N/A 0.687±0.00 N/A 1.681±0.30 0.380±0.00 0.550±0.00 N/A 3.666±0.00
ENST00000457368 N/A 1.433±0.00 N/A 0.151±0.00 1.034±0.00 2.554±0.00 N/A 0.294±0.00 1.430±0.00 N/A 1.041±0.00 1.718±0.83 0.650±0.34 2.662±0.00
ENST00000553609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557454 N/A N/A N/A N/A N/A N/A N/A 3.325±0.00 N/A N/A N/A 10.781±0.00 N/A N/A
ENST00000557478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557644 N/A N/A 1.337±0.00 0.513±0.19 N/A 2.550±0.00 1.060±0.00 N/A N/A 1.927±0.00 1.580±0.00 2.464±0.00 1.214±0.69 3.952±0.00
ENSG00000188596 ENST00000342887 N/A N/A N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A 1.250±0.39
ENST00000524981 N/A N/A N/A 0.114±0.01 N/A 0.096±0.07 N/A N/A 0.125±0.00 0.866±0.00 N/A 0.106±0.07 0.017±0.00 1.293±0.00
ENST00000550977 0.220±0.00 0.684±0.00 0.659±0.00 0.649±0.16 1.232±0.86 0.409±0.24 0.275±0.00 0.417±0.06 0.547±0.40 N/A 0.099±0.05 0.689±0.17 0.202±0.08 1.427±0.00
ENST00000553778 N/A N/A 0.251±0.00 N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554108 N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000554621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554821 0.436±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202368 ENST00000365498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.351±0.00
ENSG00000257470 ENST00000549896 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258131 ENST00000552238 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000258846 ENST00000554413 0.009±0.00 0.309±0.00 N/A 0.046±0.00 0.054±0.00 0.050±0.00 0.008±0.00 0.009±0.00 N/A 0.073±0.00 0.008±0.00 0.080±0.00 N/A 0.062±0.00
ENSG00000279190 ENST00000624902 0.040±0.00 N/A N/A N/A 0.044±0.00 N/A 0.022±0.00 0.058±0.00 0.053±0.00 N/A 0.004±0.00 N/A 0.006±0.00 0.050±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019988 ENSMUST00000020163 3.749±1.45 1.905±0.53 4.710±0.81 2.648±1.71 3.740±0.85 2.577±0.46 5.812±1.36 2.490±0.17 4.928±2.61 3.749±0.43 4.840±0.66 4.444±1.67 6.224±2.14 6.092±1.57
ENSMUSG00000020014 ENSMUST00000020200 N/A 0.349±0.13 0.011±0.00 N/A 0.189±0.00 N/A N/A 0.099±0.00 0.027±0.01 0.643±0.00 0.053±0.00 1.237±0.75 0.085±0.08 N/A
ENSMUST00000067705 0.026±0.00 N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENSMUST00000163209 0.072±0.03 N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A
ENSMUST00000164979 N/A 0.520±0.23 N/A N/A 0.168±0.07 N/A 0.091±0.00 0.146±0.03 0.036±0.00 N/A N/A 1.333±0.36 N/A N/A
ENSMUST00000165090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168080 0.117±0.01 0.548±0.28 0.036±0.01 N/A 0.344±0.22 0.087±0.03 0.034±0.00 0.085±0.05 0.094±0.06 1.881±0.00 N/A 2.615±1.07 0.058±0.03 N/A
ENSMUST00000168110 0.031±0.01 0.074±0.04 0.011±0.00 0.472±0.45 0.060±0.04 0.010±0.00 0.016±0.00 0.029±0.01 0.008±0.00 0.730±0.05 0.036±0.01 0.558±0.24 0.026±0.02 1.794±0.71
ENSMUST00000168617 N/A N/A N/A N/A 0.113±0.00 N/A 0.102±0.00 0.072±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000170065 N/A N/A N/A N/A 0.067±0.00 N/A 0.104±0.00 0.069±0.01 0.021±0.00 N/A N/A 0.711±0.00 N/A N/A
ENSMUST00000171781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088412 ENSMUST00000157787 N/A N/A N/A N/A N/A N/A N/A 304.887±0.00 N/A N/A 3.588±0.55 9.959±3.48 N/A N/A
ENSMUSG00000098040 ENSMUST00000182870 0.052±0.00 N/A N/A 0.032±0.02 N/A N/A 0.111±0.04 N/A N/A N/A 0.065±0.03 0.068±0.05 N/A 0.131±0.07

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