C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: limb development membrane protein 1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139636 LMBR1L 9606 - 12:49096551-49110900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267102 LMBR1L-001 49096551-49110898 protein_coding
  ENST00000417750 LMBR1L-002 49097136-49110681 nonsense_mediated_decay
  ENST00000457164 LMBR1L-009 49102353-49110850 nonsense_mediated_decay
  ENST00000547382 LMBR1L-005 49097142-49110850 protein_coding
  ENST00000547670 LMBR1L-004 49097700-49110877 nonsense_mediated_decay
  ENST00000547675 LMBR1L-019 49102476-49110675 protein_coding
  ENST00000547698 LMBR1L-027 49097145-49101549 protein_coding
  ENST00000547813 LMBR1L-024 49097327-49101658 retained_intron
  ENST00000548983 LMBR1L-013 49106691-49110847 processed_transcript
  ENST00000549296 LMBR1L-010 49104499-49110850 nonsense_mediated_decay
  ENST00000549429 LMBR1L-025 49100759-49101501 processed_transcript
  ENST00000549587 LMBR1L-017 49104494-49105232 retained_intron
  ENST00000549730 LMBR1L-016 49103103-49106080 retained_intron
  ENST00000550137 LMBR1L-030 49104470-49110845 protein_coding
  ENST00000550815 LMBR1L-014 49104751-49110677 nonsense_mediated_decay
  ENST00000550867 LMBR1L-006 49097158-49110667 retained_intron
  ENST00000551115 LMBR1L-003 49106423-49110884 retained_intron
  ENST00000551143 LMBR1L-021 49098002-49102343 retained_intron
  ENST00000551169 LMBR1L-015 49103081-49107011 nonsense_mediated_decay
  ENST00000551272 LMBR1L-026 49097674-49100732 retained_intron
  ENST00000551535 LMBR1L-011 49106589-49110900 retained_intron
  ENST00000551782 LMBR1L-012 49104503-49110886 protein_coding
  ENST00000551854 LMBR1L-008 49104474-49110205 protein_coding
  ENST00000552141 LMBR1L-020 49101920-49103778 retained_intron
  ENST00000552153 LMBR1L-029 49103687-49110871 processed_transcript
  ENST00000552449 LMBR1L-023 49100600-49102176 protein_coding
  ENST00000552577 LMBR1L-007 49097137-49104379 retained_intron
  ENST00000552879 LMBR1L-022 49101103-49103120 retained_intron
  ENST00000553040 LMBR1L-028 49097157-49102196 nonsense_mediated_decay
  ENST00000553204 LMBR1L-018 49103701-49110693 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267102ENST00000417750ENST00000547382ENST00000547698ENST00000549296ENST00000549429ENST00000549730ENST00000550867ENST00000551143ENST00000551272ENST00000551535ENST00000552141ENST00000552577ENST00000553040ENST00000553204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267102 N/A N/A N/A N/A N/A N/A N/A 0.228±0.00 N/A N/A N/A N/A N/A N/A
ENST00000417750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.976±0.00 N/A N/A 12.698±0.00
ENST00000547382 1.710±0.00 N/A N/A N/A 2.530±0.00 2.769±0.00 N/A 2.411±0.00 2.130±0.00 4.858±0.00 1.308±0.00 7.538±0.86 9.212±4.33 12.040±0.00
ENST00000547698 3.901±0.00 7.143±0.00 N/A N/A 6.420±0.00 4.965±0.00 3.178±0.00 6.849±0.00 3.549±0.00 N/A 1.526±0.00 N/A 8.405±0.00 22.615±0.00
ENST00000549296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.360±0.00 N/A N/A N/A
ENST00000549429 N/A N/A N/A N/A N/A N/A N/A 1.017±0.00 N/A N/A N/A 6.994±0.00 N/A N/A
ENST00000549730 N/A N/A N/A 3.181±0.00 N/A N/A N/A N/A N/A N/A N/A 18.705±0.00 15.323±0.00 62.882±0.00
ENST00000550867 1.270±0.00 3.520±0.00 N/A 2.291±0.00 N/A N/A 1.547±0.00 1.299±0.00 N/A N/A N/A 6.436±0.00 N/A N/A
ENST00000551143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.551±0.00 N/A N/A N/A
ENST00000551272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.627±0.00 N/A N/A N/A
ENST00000551535 N/A N/A N/A 1.012±0.00 2.753±0.00 1.391±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552141 N/A N/A N/A N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A 4.691±0.00 N/A N/A
ENST00000552577 N/A 3.622±0.00 0.737±0.00 N/A 2.341±0.00 1.972±0.00 1.290±0.00 2.244±0.00 N/A 4.543±0.00 N/A 5.459±3.97 N/A N/A
ENST00000553040 N/A N/A N/A N/A N/A 1.436±0.00 N/A N/A N/A N/A N/A N/A 8.698±0.00 N/A
ENST00000553204 N/A N/A N/A 1.525±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000I CIL_00000I_0001 CGP 12:49089421-49110900
CIL_00000A CIL_00000A_0001 CGP 12:49096551-49131397

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006897 IEA endocytosis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004745 lmbr1l limb region 1 like protein_coding Danio_rerio
ENSMUSG00000022999 Lmbr1l limb region 1 like protein_coding Mus_musculus

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