C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 33 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139719 VPS33A 9606 - 12:122229564-122266521 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267199 VPS33A-001 122229564-122266521 protein_coding
  ENST00000451053 VPS33A-002 122252881-122266416 protein_coding
  ENST00000536212 VPS33A-008 122242431-122250165 protein_coding
  ENST00000540669 VPS33A-007 122244561-122251036 processed_transcript
  ENST00000541169 VPS33A-009 122232819-122249970 processed_transcript
  ENST00000542310 VPS33A-004 122251058-122266316 processed_transcript
  ENST00000542790 VPS33A-006 122249616-122251685 retained_intron
  ENST00000543633 VPS33A-003 122232139-122266439 nonsense_mediated_decay
  ENST00000544349 VPS33A-005 122249522-122266461 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267199ENST00000543633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267199 2.016±0.00 4.188±0.00 1.097±0.00 3.149±1.17 2.531±0.50 1.330±0.31 1.066±0.43 3.024±0.52 1.371±0.18 0.968±0.06 1.717±1.17 3.828±0.90 6.574±1.72 4.518±1.05
ENST00000543633 N/A N/A N/A N/A 2.655±0.00 2.478±0.00 1.695±0.57 N/A 1.774±0.00 1.660±0.00 1.695±0.68 5.480±0.00 8.604±0.00 9.831±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016192 IDA:IEA vesicle-mediated transport
GO:0030220 ISS platelet formation
GO:0030897 IDA HOPS complex
GO:0032400 IDA melanosome localization
GO:0032418 IDA lysosome localization
GO:0048070 ISS regulation of developmental pigmentation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079019 BX510999.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000091881 vps33a vacuolar protein sorting 33A protein_coding Danio_rerio
ENSMUSG00000029434 Vps33a vacuolar protein sorting 33A (yeast) protein_coding Mus_musculus

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