C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ZE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139719-ENSG00000130779 CGP 9606 12:122229564-122422632
GeneTranscriptPositionBiotype
ENSG00000130779 (CLIP1)
CAP-GLY domain containing linker protein 1 		ENST00000302528 (CLIP1-001) 122271434-122380560 protein_coding
ENST00000358808 (CLIP1-201) 122271434-122422569 protein_coding
ENST00000361654 (CLIP1-007) 122271432-122422588 protein_coding
ENST00000501271 (CLIP1-014) 122272461-122275823 retained_intron
ENST00000514271 (CLIP1-011) 122334085-122344044 retained_intron
ENST00000535290 (CLIP1-017) 122377721-122400014 protein_coding
ENST00000536634 (CLIP1-013) 122272599-122279147 processed_transcript
ENST00000537004 (CLIP1-006) 122351028-122395997 protein_coding
ENST00000537178 (CLIP1-002) 122272043-122422632 protein_coding
ENST00000538120 (CLIP1-010) 122272806-122280878 retained_intron
ENST00000539080 (CLIP1-016) 122377796-122422612 protein_coding
ENST00000540304 (CLIP1-005) 122332985-122395427 protein_coding
ENST00000540338 (CLIP1-003) 122272834-122380494 protein_coding
ENST00000540539 (CLIP1-015) 122272668-122278472 protein_coding
ENST00000541108 (CLIP1-004) 122354910-122380559 nonsense_mediated_decay
ENST00000541410 (CLIP1-012) 122341088-122356160 retained_intron
ENST00000543205 (CLIP1-009) 122277368-122280058 retained_intron
ENST00000545889 (CLIP1-008) 122271434-122364017 protein_coding
ENST00000620786 (CLIP1-202) 122271434-122422569 protein_coding
ENSG00000139719 (VPS33A)
vacuolar protein sorting 33 homolog A (S. cerevisiae) 		ENST00000267199 (VPS33A-001) 122229564-122266521 protein_coding
ENST00000451053 (VPS33A-002) 122252881-122266416 protein_coding
ENST00000536212 (VPS33A-008) 122242431-122250165 protein_coding
ENST00000540669 (VPS33A-007) 122244561-122251036 processed_transcript
ENST00000541169 (VPS33A-009) 122232819-122249970 processed_transcript
ENST00000542310 (VPS33A-004) 122251058-122266316 processed_transcript
ENST00000542790 (VPS33A-006) 122249616-122251685 retained_intron
ENST00000543633 (VPS33A-003) 122232139-122266439 nonsense_mediated_decay
ENST00000544349 (VPS33A-005) 122249522-122266461 retained_intron
ENSG00000214760 (RPL21P1)
ribosomal protein L21 pseudogene 1 		ENST00000399532 (RPL21P1-001) 122364780-122365629 processed_pseudogene
ENSG00000256304 (CCDC150P1)
coiled-coil domain containing 150 pseudogene 1 		ENST00000537123 (CCDC150P1-001) 122322122-122324336 processed_pseudogene
ENSG00000256861 (RP11-512M8.5)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000454454} 		ENST00000535844 (RP11-512M8.5-001) 122207779-122266423 nonsense_mediated_decay
ENSG00000280389 (RP11-512M8.11)
 ENST00000623601 (RP11-512M8.11-001) 122255119-122260274 TEC
CIL_0002ZE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029434-ENSMUSG00000049550 CGP 10090 5:123528764-123684618
GeneTranscriptPositionBiotype
ENSMUSG00000029434 (Vps33a)
vacuolar protein sorting 33A (yeast) 		ENSMUST00000031388 (Vps33a-201) 123528764-123573015 protein_coding
ENSMUSG00000049550 (Clip1)
CAP-GLY domain containing linker protein 1 		ENSMUST00000031382 (Clip1-008) 123579244-123656018 protein_coding
ENSMUST00000063905 (Clip1-003) 123578833-123684325 protein_coding
ENSMUST00000111561 (Clip1-005) 123577807-123684275 protein_coding
ENSMUST00000111564 (Clip1-002) 123577795-123684322 protein_coding
ENSMUST00000111566 (Clip1-001) 123577795-123684618 protein_coding
ENSMUST00000125340 (Clip1-010) 123577818-123603810 retained_intron
ENSMUST00000133545 (Clip1-013) 123586187-123617463 retained_intron
ENSMUST00000137363 (Clip1-007) 123577807-123647877 protein_coding
ENSMUST00000137602 (Clip1-009) 123579074-123612172 retained_intron
ENSMUST00000144121 (Clip1-006) 123617657-123655908 nonsense_mediated_decay
ENSMUST00000149410 (Clip1-004) 123617706-123666690 protein_coding
ENSMUST00000154432 (Clip1-012) 123590069-123603719 retained_intron
ENSMUST00000154672 (Clip1-011) 123579451-123617822 protein_coding
ENSMUSG00000084552 (Gm24840)
predicted gene, 24840 		ENSMUST00000122603 (Gm24840-201) 123628201-123628347 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZE_0001ENSG00000130779ENST00000302528ENST00000358808ENST00000361654ENST00000501271ENST00000514271ENST00000535290ENST00000536634ENST00000537004ENST00000537178ENST00000538120ENST00000539080ENST00000540304ENST00000540338ENST00000540539ENST00000541108ENST00000541410ENST00000543205ENST00000545889ENST00000620786ENSG00000139719ENST00000267199ENST00000451053ENST00000536212ENST00000540669ENST00000541169ENST00000542310ENST00000542790ENST00000543633ENST00000544349ENSG00000214760ENST00000399532ENSG00000256304ENST00000537123ENSG00000256861ENST00000535844ENSG00000280389ENST00000623601CIL_0002ZE_0002ENSMUSG00000029434ENSMUST00000031388ENSMUSG00000049550ENSMUST00000031382ENSMUST00000063905ENSMUST00000111561ENSMUST00000111564ENSMUST00000111566ENSMUST00000125340ENSMUST00000133545ENSMUST00000137363ENSMUST00000137602ENSMUST00000144121ENSMUST00000149410ENSMUST00000154432ENSMUST00000154672ENSMUSG00000084552ENSMUST00000122603
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZE_0001ENSG00000130779ENST00000302528ENST00000358808ENST00000361654ENST00000537178ENST00000540338ENST00000541108ENST00000545889ENST00000620786ENSG00000139719ENST00000267199ENST00000543633ENSG00000214760ENST00000399532ENSG00000256304ENST00000537123ENSG00000256861ENST00000535844ENSG00000280389ENST00000623601CIL_0002ZE_0002ENSMUSG00000029434ENSMUST00000031388ENSMUSG00000049550ENSMUST00000031382ENSMUST00000063905ENSMUST00000111561ENSMUST00000111564ENSMUST00000111566ENSMUST00000125340ENSMUST00000133545ENSMUST00000137363ENSMUST00000137602ENSMUST00000144121ENSMUST00000149410ENSMUST00000154672ENSMUSG00000084552ENSMUST00000122603
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130779 ENST00000302528 N/A N/A N/A 1.092±0.00 N/A N/A N/A 4.919±0.00 2.853±0.00 3.921±0.00 N/A N/A N/A N/A
ENST00000358808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.809±0.00
ENST00000361654 2.287±0.00 4.684±0.00 N/A 1.699±0.79 N/A N/A 2.214±1.68 4.885±0.00 1.909±0.00 4.553±0.00 23.287±0.00 3.695±0.75 N/A 3.065±0.00
ENST00000501271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.825±0.00 21.570±0.00 8.670±0.00
ENST00000538120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540338 5.270±0.00 2.911±0.00 N/A 5.628±0.00 N/A 4.923±0.00 4.861±0.00 N/A N/A N/A N/A 2.694±0.00 N/A 4.581±0.38
ENST00000540539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541108 N/A N/A 5.257±0.00 N/A N/A N/A N/A N/A N/A N/A 23.748±0.00 N/A N/A N/A
ENST00000541410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545889 3.864±0.00 3.057±0.00 N/A 4.671±2.75 4.724±0.00 8.654±0.00 N/A 2.760±0.73 1.856±0.00 6.461±0.00 25.225±0.00 4.041±1.14 10.622±0.00 3.427±0.83
ENST00000620786 N/A N/A N/A 0.794±0.00 N/A 2.298±0.00 5.281±2.74 2.473±0.00 2.348±1.39 N/A 31.105±20.49 N/A N/A N/A
ENSG00000139719 ENST00000267199 2.016±0.00 4.188±0.00 1.097±0.00 3.149±1.17 2.531±0.50 1.330±0.31 1.066±0.43 3.024±0.52 1.371±0.18 0.968±0.06 1.717±1.17 3.828±0.90 6.574±1.72 4.518±1.05
ENST00000451053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543633 N/A N/A N/A N/A 2.655±0.00 2.478±0.00 1.695±0.57 N/A 1.774±0.00 1.660±0.00 1.695±0.68 5.480±0.00 8.604±0.00 9.831±0.00
ENST00000544349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214760 ENST00000399532 0.127±0.00 0.157±0.00 N/A 0.026±0.00 0.051±0.00 0.024±0.00 N/A 0.063±0.04 0.023±0.00 0.073±0.00 0.860±0.81 0.090±0.03 N/A 0.070±0.00
ENSG00000256304 ENST00000537123 0.101±0.00 0.163±0.00 0.514±0.00 0.105±0.02 0.803±0.76 0.603±0.48 0.502±0.15 0.360±0.09 0.829±0.81 0.529±0.19 0.474±0.41 0.409±0.43 0.177±0.11 2.425±1.56
ENSG00000256861 ENST00000535844 N/A 4.571±0.00 N/A 4.277±0.00 2.890±0.00 N/A N/A 3.502±0.60 N/A N/A 2.241±0.00 N/A N/A 8.382±0.00
ENSG00000280389 ENST00000623601 0.085±0.00 0.254±0.00 N/A 0.117±0.00 0.180±0.09 0.130±0.10 0.119±0.00 N/A N/A N/A N/A N/A 0.068±0.00 0.044±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029434 ENSMUST00000031388 8.891±0.62 11.291±0.72 6.507±0.07 15.073±2.23 8.032±1.81 5.886±1.08 3.885±0.29 8.212±2.48 6.286±2.42 6.609±0.66 5.350±0.74 8.353±3.16 8.536±0.47 2.702±0.89
ENSMUSG00000049550 ENSMUST00000031382 N/A 2.250±0.52 N/A 13.060±0.00 N/A N/A 4.724±0.13 N/A N/A 2.904±0.00 11.747±0.04 21.223±15.38 18.640±13.58 N/A
ENSMUST00000063905 1.302±0.00 N/A N/A 11.315±5.10 N/A 2.759±0.36 2.886±0.00 0.911±0.00 N/A N/A N/A 2.907±0.45 N/A 4.412±0.00
ENSMUST00000111561 N/A N/A N/A N/A N/A N/A N/A N/A 0.468±0.04 N/A 10.248±2.33 2.843±0.00 3.114±0.00 N/A
ENSMUST00000111564 5.135±0.19 2.477±0.83 8.023±0.31 N/A 4.625±0.50 3.934±2.00 7.412±1.89 3.879±0.39 1.909±0.59 9.862±0.94 20.761±8.55 4.635±3.67 6.580±2.06 N/A
ENSMUST00000111566 1.872±0.00 1.016±0.23 3.571±0.09 3.372±0.14 1.160±0.22 1.252±0.60 N/A 1.145±0.38 0.766±0.24 2.606±0.71 9.753±0.00 1.669±0.58 2.879±0.23 N/A
ENSMUST00000125340 4.554±1.26 8.808±3.02 9.543±0.70 N/A 3.709±0.58 3.376±0.00 13.253±0.00 3.374±0.78 1.894±0.75 7.530±1.17 23.411±5.14 3.780±1.29 2.704±0.00 N/A
ENSMUST00000133545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.281±0.00 N/A
ENSMUST00000137363 N/A 2.619±1.05 N/A 13.102±7.14 1.322±0.00 2.145±0.85 N/A N/A N/A N/A N/A 3.788±1.11 6.712±0.00 N/A
ENSMUST00000137602 N/A N/A N/A N/A N/A 2.748±0.45 N/A N/A N/A N/A N/A 3.780±0.95 N/A 36.261±7.83
ENSMUST00000144121 N/A 2.873±0.89 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.210±0.00
ENSMUST00000149410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.040±11.60
ENSMUST00000154432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.258±62.57
ENSMUSG00000084552 ENSMUST00000122603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.560±0.00 4.505±0.00 N/A N/A

Loading