C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267199 VPS33A-001 ENSG00000139719 9606 - 12:122229564-122266521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267199 2.016±0.00 4.188±0.00 1.097±0.00 3.149±1.17 2.531±0.50 1.330±0.31 1.066±0.43 3.024±0.52 1.371±0.18 0.968±0.06 1.717±1.17 3.828±0.90 6.574±1.72 4.518±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0001 CGP 12:122229564-122422632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016192 IDA:IEA vesicle-mediated transport
GO:0030220 ISS platelet formation
GO:0030897 IDA HOPS complex
GO:0032400 IDA melanosome localization
GO:0032418 IDA lysosome localization
GO:0048070 ISS regulation of developmental pigmentation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031388 Vps33a-201 protein_coding Mus_musculus 0 2017
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000008 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00008 55

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