C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140391 TSPAN3 9606 - 15:77041404-77083984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267970 TSPAN3-001 77041404-77071228 protein_coding
  ENST00000346495 TSPAN3-002 77046030-77071109 protein_coding
  ENST00000424443 TSPAN3-003 77046030-77071109 protein_coding
  ENST00000558394 TSPAN3-011 77054181-77071109 processed_transcript
  ENST00000558745 TSPAN3-008 77046332-77083984 protein_coding
  ENST00000559373 TSPAN3-009 77069867-77071092 processed_transcript
  ENST00000559494 TSPAN3-004 77046084-77071034 protein_coding
  ENST00000560514 TSPAN3-010 77055836-77071109 retained_intron
  ENST00000560715 TSPAN3-005 77046030-77055934 retained_intron
  ENST00000561277 TSPAN3-012 77046060-77071122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267970ENST00000346495ENST00000424443ENST00000558745ENST00000561277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267970 N/A N/A 0.814±0.00 N/A 7.410±6.30 2.093±0.00 0.403±0.00 N/A 0.980±0.00 1.866±0.00 2.049±0.00 N/A N/A N/A
ENST00000346495 28.922±0.00 49.517±0.00 9.672±0.00 54.600±16.57 56.949±51.43 29.512±9.07 9.855±6.83 40.362±34.92 8.019±0.54 32.216±22.12 22.730±10.29 22.342±5.34 16.225±4.35 46.964±0.00
ENST00000424443 35.204±0.00 53.630±0.00 N/A 59.906±0.00 91.688±0.00 36.150±0.00 N/A 39.799±0.00 4.112±0.00 N/A N/A 64.397±30.06 25.646±17.55 36.572±11.43
ENST00000558745 20.455±0.00 N/A N/A 49.565±0.00 N/A N/A 11.622±0.00 N/A 5.779±0.00 43.386±0.00 23.654±0.00 N/A N/A N/A
ENST00000561277 N/A N/A 4.475±0.00 41.431±0.00 21.634±0.00 26.227±0.00 11.760±5.84 18.826±15.04 9.446±2.83 26.429±14.65 20.944±2.64 79.804±45.83 48.510±7.16 40.717±25.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NQ CIL_0003NQ_0002 CGP 15:76993359-77083984
CIL_0001UP CIL_0001UP_0001 CGP 15:77041404-77420144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034753 tspan3a tetraspanin 3a protein_coding Danio_rerio
ENSDARG00000053559 tspan3b tetraspanin 3b protein_coding Danio_rerio
ENSMUSG00000032324 Tspan3 tetraspanin 3 protein_coding Mus_musculus

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