C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001UP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140391-ENSG00000173517 CGP 9606 15:77041404-77420144
GeneTranscriptPositionBiotype
ENSG00000140391 (TSPAN3)
tetraspanin 3 		ENST00000267970 (TSPAN3-001) 77041404-77071228 protein_coding
ENST00000346495 (TSPAN3-002) 77046030-77071109 protein_coding
ENST00000424443 (TSPAN3-003) 77046030-77071109 protein_coding
ENST00000558394 (TSPAN3-011) 77054181-77071109 processed_transcript
ENST00000558745 (TSPAN3-008) 77046332-77083984 protein_coding
ENST00000559373 (TSPAN3-009) 77069867-77071092 processed_transcript
ENST00000559494 (TSPAN3-004) 77046084-77071034 protein_coding
ENST00000560514 (TSPAN3-010) 77055836-77071109 retained_intron
ENST00000560715 (TSPAN3-005) 77046030-77055934 retained_intron
ENST00000561277 (TSPAN3-012) 77046060-77071122 protein_coding
ENSG00000173517 (PEAK1)
pseudopodium-enriched atypical kinase 1 		ENST00000312493 (PEAK1-201) 77108164-77252531 protein_coding
ENST00000558305 (PEAK1-005) 77177819-77420122 protein_coding
ENST00000559791 (PEAK1-004) 77177856-77179147 processed_transcript
ENST00000560626 (PEAK1-001) 77100656-77420144 protein_coding
ENST00000560854 (PEAK1-003) 77155200-77179808 retained_intron
ENST00000564328 (PEAK1-006) 77179958-77420100 protein_coding
ENST00000565820 (PEAK1-012) 77181747-77255552 protein_coding
ENST00000567337 (PEAK1-013) 77252422-77420104 processed_transcript
ENST00000567808 (PEAK1-011) 77181979-77420100 processed_transcript
ENST00000569159 (PEAK1-014) 77252499-77420094 processed_transcript
ENST00000569692 (PEAK1-010) 77283762-77285100 processed_transcript
ENST00000569819 (PEAK1-009) 77252479-77346631 processed_transcript
ENSG00000230459 (RP11-741G21.1)
 ENST00000421698 (RP11-741G21.1-001) 77278465-77278774 processed_pseudogene
ENSG00000259722 (RP11-94P14.1)
 ENST00000560574 (RP11-94P14.1-001) 77204578-77205100 processed_pseudogene
ENSG00000269951 (RP11-797A18.6)
 ENST00000602975 (RP11-797A18.6-001) 77067654-77068325 sense_intronic
ENSG00000278991 (RP11-797A18.5)
 ENST00000624777 (RP11-797A18.5-001) 77063397-77064910 TEC
CIL_0001UP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032324-ENSMUSG00000074305 CGP 10090 9:56135885-56418067
GeneTranscriptPositionBiotype
ENSMUSG00000032324 (Tspan3)
tetraspanin 3 		ENSMUST00000034876 (Tspan3-201) 56135885-56161070 protein_coding
ENSMUSG00000074305 (Peak1)
pseudopodium-enriched atypical kinase 1 		ENSMUST00000061552 (Peak1-001) 56205129-56418067 protein_coding
ENSMUST00000185775 (Peak1-003) 56416699-56418050 retained_intron
ENSMUST00000186735 (Peak1-004) 56260557-56418042 protein_coding
ENSMUST00000188142 (Peak1-002) 56201126-56244065 protein_coding
ENSMUSG00000099543 (RP23-456B7.4)
predicted gene 29322 		ENSMUST00000185378 (RP23-456B7.4-001) 56239285-56240751 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001UP_0001ENSG00000140391ENST00000267970ENST00000346495ENST00000424443ENST00000558394ENST00000558745ENST00000559373ENST00000559494ENST00000560514ENST00000560715ENST00000561277ENSG00000173517ENST00000312493ENST00000558305ENST00000559791ENST00000560626ENST00000560854ENST00000564328ENST00000565820ENST00000567337ENST00000567808ENST00000569159ENST00000569692ENST00000569819ENSG00000230459ENST00000421698ENSG00000259722ENST00000560574ENSG00000269951ENST00000602975ENSG00000278991ENST00000624777CIL_0001UP_0002ENSMUSG00000032324ENSMUST00000034876ENSMUSG00000074305ENSMUST00000061552ENSMUST00000185775ENSMUST00000186735ENSMUST00000188142ENSMUSG00000099543ENSMUST00000185378
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001UP_0001ENSG00000140391ENST00000267970ENST00000346495ENST00000424443ENST00000558745ENST00000561277ENSG00000173517ENST00000312493ENST00000560854ENST00000564328ENSG00000230459ENST00000421698ENSG00000259722ENST00000560574ENSG00000269951ENST00000602975ENSG00000278991ENST00000624777CIL_0001UP_0002ENSMUSG00000032324ENSMUST00000034876ENSMUSG00000074305ENSMUST00000061552ENSMUST00000188142ENSMUSG00000099543ENSMUST00000185378
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140391 ENST00000267970 N/A N/A 0.814±0.00 N/A 7.410±6.30 2.093±0.00 0.403±0.00 N/A 0.980±0.00 1.866±0.00 2.049±0.00 N/A N/A N/A
ENST00000346495 28.922±0.00 49.517±0.00 9.672±0.00 54.600±16.57 56.949±51.43 29.512±9.07 9.855±6.83 40.362±34.92 8.019±0.54 32.216±22.12 22.730±10.29 22.342±5.34 16.225±4.35 46.964±0.00
ENST00000424443 35.204±0.00 53.630±0.00 N/A 59.906±0.00 91.688±0.00 36.150±0.00 N/A 39.799±0.00 4.112±0.00 N/A N/A 64.397±30.06 25.646±17.55 36.572±11.43
ENST00000558394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558745 20.455±0.00 N/A N/A 49.565±0.00 N/A N/A 11.622±0.00 N/A 5.779±0.00 43.386±0.00 23.654±0.00 N/A N/A N/A
ENST00000559373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561277 N/A N/A 4.475±0.00 41.431±0.00 21.634±0.00 26.227±0.00 11.760±5.84 18.826±15.04 9.446±2.83 26.429±14.65 20.944±2.64 79.804±45.83 48.510±7.16 40.717±25.22
ENSG00000173517 ENST00000312493 10.104±0.00 5.814±0.00 2.660±0.00 4.088±0.83 6.905±0.76 4.638±0.16 3.804±2.52 2.006±0.57 3.646±2.93 7.793±1.34 1.711±0.80 3.584±0.66 3.870±0.28 6.046±1.05
ENST00000558305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.510±0.00 3.292±0.00 6.255±0.00
ENST00000564328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.035±0.00 N/A N/A N/A
ENST00000565820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230459 ENST00000421698 N/A N/A N/A 0.149±0.00 N/A N/A 0.156±0.00 N/A 0.434±0.00 N/A N/A 0.053±0.00 N/A 0.105±0.00
ENSG00000259722 ENST00000560574 N/A N/A N/A 0.644±0.00 N/A N/A 0.163±0.00 N/A N/A N/A N/A 0.059±0.00 N/A N/A
ENSG00000269951 ENST00000602975 0.118±0.00 0.519±0.00 1.594±0.00 0.740±0.04 1.936±1.03 4.552±4.20 0.288±0.01 0.125±0.00 1.315±0.00 1.972±1.58 1.665±0.00 2.003±1.88 0.142±0.07 1.042±0.71
ENSG00000278991 ENST00000624777 0.219±0.00 0.448±0.00 0.955±0.00 0.724±0.28 1.366±0.96 1.566±1.48 0.237±0.11 0.317±0.29 0.473±0.45 0.926±0.81 0.027±0.00 0.742±1.02 0.020±0.00 0.137±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032324 ENSMUST00000034876 136.409±5.44 139.260±21.95 77.370±9.47 122.219±31.57 123.450±10.16 333.210±47.90 114.013±18.57 168.834±6.86 8.956±5.86 66.584±3.82 44.457±4.21 132.986±51.21 38.457±8.90 31.290±10.20
ENSMUSG00000074305 ENSMUST00000061552 1.476±0.00 1.423±0.00 1.566±0.00 N/A 1.296±0.21 0.744±0.11 N/A N/A 0.396±0.00 2.270±0.11 1.192±0.00 2.604±0.25 0.839±0.02 0.617±0.28
ENSMUST00000185775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188142 6.047±0.72 8.105±0.83 3.677±2.27 0.548±0.30 5.352±1.01 2.616±1.29 2.192±0.86 2.171±0.13 0.892±0.36 9.434±0.64 0.809±0.56 7.195±3.13 1.597±0.71 1.471±0.27
ENSMUSG00000099543 ENSMUST00000185378 N/A N/A 0.054±0.04 0.035±0.01 N/A N/A 0.076±0.00 N/A 0.037±0.01 N/A N/A 0.107±0.00 0.085±0.05 N/A

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