C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140525 FANCI 9606 + 15:89243949-89317261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300027 FANCI-001 89243949-89317261 protein_coding
  ENST00000310775 FANCI-002 89243967-89317129 protein_coding
  ENST00000447611 FANCI-004 89244004-89316481 nonsense_mediated_decay
  ENST00000561894 FANCI-005 89263437-89316444 protein_coding
  ENST00000563250 FANCI-012 89244034-89264004 protein_coding
  ENST00000564350 FANCI-016 89282993-89290592 retained_intron
  ENST00000564636 FANCI-013 89247602-89259350 retained_intron
  ENST00000564920 FANCI-009 89243990-89261673 protein_coding
  ENST00000565255 FANCI-008 89243990-89264037 protein_coding
  ENST00000565522 FANCI-015 89244250-89314646 processed_transcript
  ENST00000566615 FANCI-011 89307859-89316426 processed_transcript
  ENST00000566895 FANCI-006 89278687-89317128 retained_intron
  ENST00000567891 FANCI-007 89243975-89261847 protein_coding
  ENST00000567996 FANCI-003 89244017-89264651 protein_coding
  ENST00000568670 FANCI-010 89243973-89260765 processed_transcript
  ENST00000570110 FANCI-014 89244008-89259068 retained_intron
  ENST00000570225 FANCI-017 89261838-89268631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLungOvaryPlacentaTestisENST00000310775ENST00000561894ENST00000566895
Transcript ID Bladder Breast Colon Lung Ovary Placenta Testis
ENST00000310775 N/A 0.690±0.00 N/A N/A 5.479±2.81 4.420±2.36 13.158±6.84
ENST00000561894 N/A N/A N/A N/A 11.187±0.00 N/A 12.088±8.37
ENST00000566895 0.395±0.00 0.685±0.00 1.663±0.00 0.758±0.00 1.882±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011C CIL_00011C_0001 CGP 15:89209869-89317261
CIL_0002RC CIL_0002RC_0002 CGP 15:89243949-89334861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006281 IEA:TAS DNA repair
GO:0007049 IEA cell cycle
GO:0016020 IDA membrane
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0070182 IPI DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026224 fanci Fanconi anemia, complementation group I protein_coding Danio_rerio
ENSMUSG00000039187 Fanci Fanconi anemia, complementation group I protein_coding Mus_musculus

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