C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310775 FANCI-002 ENSG00000140525 9606 + 15:89243967-89317129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaTestisENST00000310775
Transcript ID Breast Ovary Placenta Testis
ENST00000310775 0.690±0.00 5.479±2.81 4.420±2.36 13.158±6.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011C CIL_00011C_0001 CGP 15:89209869-89317261
CIL_0002RC CIL_0002RC_0002 CGP 15:89243949-89334861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006281 IEA:TAS DNA repair
GO:0007049 IEA cell cycle
GO:0016020 IDA membrane
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0070182 IPI DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117227 Fanci-001 protein_coding Mus_musculus 0 3958
ENSMUST00000036865 Fanci-201 protein_coding Mus_musculus 0 3884
ENSMUST00000137667 Fanci-003 protein_coding Mus_musculus 0 2290
ENSMUST00000132091 Fanci-004 nonsense_mediated_decay Mus_musculus 0 2130
ENSMUST00000118959 Fanci-002 protein_coding Mus_musculus 0 802
ENSMUST00000149444 Polg-002 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000127082 Polg-003 retained_intron Mus_musculus 0 302
ENSMUST00000154403 Polg-004 retained_intron Mus_musculus 0 302
ENSMUST00000073889 Polg-001 protein_coding Mus_musculus 0 302

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