C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CREB regulated transcription coactivator 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140577 CRTC3 9606 + 15:90529925-90645345 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268184 CRTC3-001 90530068-90642813 protein_coding
  ENST00000420329 CRTC3-002 90529925-90645345 protein_coding
  ENST00000558005 CRTC3-014 90593713-90625940 protein_coding
  ENST00000558167 CRTC3-010 90637852-90638517 processed_transcript
  ENST00000558496 CRTC3-004 90597874-90604404 processed_transcript
  ENST00000558619 CRTC3-013 90530532-90607410 processed_transcript
  ENST00000560047 CRTC3-008 90613657-90619790 processed_transcript
  ENST00000560098 CRTC3-012 90529968-90599535 protein_coding
  ENST00000560320 CRTC3-007 90624907-90629413 processed_transcript
  ENST00000560927 CRTC3-011 90539617-90595577 retained_intron
  ENST00000561119 CRTC3-009 90593712-90618206 retained_intron
  ENST00000561218 CRTC3-006 90530063-90600646 processed_transcript
  ENST00000561255 CRTC3-005 90598346-90625786 processed_transcript
  ENST00000561290 CRTC3-003 90597843-90598911 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000268184ENST00000420329ENST00000560098ENST00000560927ENST00000561290
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000268184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.133±0.00
ENST00000420329 7.491±0.00 9.975±0.00 6.203±5.30 2.715±0.00 4.996±4.23 2.463±1.32 1.522±1.24 2.681±0.78 N/A 18.422±14.62 13.835±0.00
ENST00000560098 N/A N/A N/A N/A 1.329±0.00 N/A N/A 1.813±0.00 N/A N/A N/A
ENST00000560927 N/A N/A N/A N/A N/A N/A N/A 0.984±0.00 N/A 1.179±0.00 N/A
ENST00000561290 N/A N/A N/A N/A N/A N/A N/A N/A 3.678±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0001 VISTA 15:90100149-90701385
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008140 IEA cAMP response element binding protein binding
GO:0016032 IEA viral process
GO:0032793 IEA positive regulation of CREB transcription factor activity
GO:0043951 IEA negative regulation of cAMP-mediated signaling
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050995 IEA negative regulation of lipid catabolic process
GO:0051289 IEA protein homotetramerization
GO:0097009 IEA energy homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052114 crtc3 CREB regulated transcription coactivator 3 protein_coding Danio_rerio
ENSMUSG00000030527 Crtc3 CREB regulated transcription coactivator 3 protein_coding Mus_musculus

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