C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secernin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141295 SCRN2 9606 - 17:47837692-47841333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290216 SCRN2-001 47837700-47841333 protein_coding
  ENST00000407215 SCRN2-002 47837692-47841289 protein_coding
  ENST00000578323 SCRN2-013 47839459-47841267 protein_coding
  ENST00000578840 SCRN2-009 47839674-47841223 retained_intron
  ENST00000579856 SCRN2-008 47838313-47841265 nonsense_mediated_decay
  ENST00000580428 SCRN2-007 47839902-47841279 retained_intron
  ENST00000581546 SCRN2-005 47839661-47841261 retained_intron
  ENST00000581645 SCRN2-003 47837708-47841247 nonsense_mediated_decay
  ENST00000582459 SCRN2-004 47837720-47840850 nonsense_mediated_decay
  ENST00000582656 SCRN2-012 47838961-47839947 retained_intron
  ENST00000583090 SCRN2-010 47838959-47841104 nonsense_mediated_decay
  ENST00000584123 SCRN2-006 47837707-47841173 protein_coding
  ENST00000584567 SCRN2-011 47837720-47839595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290216ENST00000407215ENST00000578840ENST00000580428ENST00000581546ENST00000581645ENST00000582459ENST00000584123ENST00000584567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290216 30.346±0.00 7.050±0.00 N/A 1.090±0.00 44.161±0.00 5.240±0.00 3.827±0.00 N/A 2.158±0.00 N/A N/A 5.169±4.04 12.965±4.14 10.422±0.00
ENST00000407215 N/A 5.010±0.00 2.503±0.00 1.186±0.67 2.092±0.00 1.918±0.00 1.190±0.39 6.551±4.59 1.273±0.00 0.547±0.00 2.280±0.00 13.706±2.43 7.039±1.87 N/A
ENST00000578840 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.611±0.00 N/A N/A N/A N/A
ENST00000580428 N/A N/A N/A 1.991±0.00 N/A 1.116±0.00 1.878±0.00 N/A N/A 0.859±0.00 N/A 1.625±0.00 N/A N/A
ENST00000581546 N/A N/A 1.501±0.00 N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581645 N/A N/A N/A 5.170±0.00 N/A N/A N/A 3.794±1.47 1.590±0.00 N/A 6.152±0.00 25.923±0.00 12.254±0.00 N/A
ENST00000582459 N/A N/A 1.954±0.00 N/A N/A N/A N/A N/A 1.380±0.00 N/A N/A 0.988±0.00 N/A N/A
ENST00000584123 10.562±0.00 3.494±0.00 1.750±0.00 1.815±0.00 23.446±0.00 N/A N/A 3.543±0.00 1.437±0.00 N/A N/A 12.164±0.00 5.431±0.00 N/A
ENST00000584567 N/A 5.394±0.00 N/A 4.841±0.00 27.685±0.00 4.561±0.00 3.816±0.00 6.428±0.00 3.494±0.00 N/A N/A 1.103±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016805 IEA dipeptidase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043497 scrn2 secernin 2 protein_coding Danio_rerio
ENSMUSG00000020877 Scrn2 secernin 2 protein_coding Mus_musculus

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