C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581645 SCRN2-003 ENSG00000141295 9606 - 17:47837708-47841247 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleOvaryPlacentaENST00000581645
Transcript ID Brain Kidney Liver Muscle Ovary Placenta
ENST00000581645 5.170±0.00 3.794±1.47 1.590±0.00 6.152±0.00 25.923±0.00 12.254±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021249 Scrn2-001 protein_coding Mus_musculus 0 1247
ENSMUST00000126874 Scrn2-002 retained_intron Mus_musculus 0 859
ENSMUST00000153482 Scrn2-003 protein_coding Mus_musculus 0 599

Loading