C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor I/C (CCAAT-binding transcription factor)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141905 NFIC 9606 + 19:3359563-3469217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341919 NFIC-004 3366549-3462967 protein_coding
  ENST00000395111 NFIC-003 3359647-3463142 protein_coding
  ENST00000443272 NFIC-006 3366586-3462907 protein_coding
  ENST00000586919 NFIC-011 3359683-3456600 protein_coding
  ENST00000588839 NFIC-007 3410596-3425147 processed_transcript
  ENST00000589123 NFIC-001 3359563-3469217 protein_coding
  ENST00000589164 NFIC-009 3452579-3457989 processed_transcript
  ENST00000589537 NFIC-010 3435046-3463255 retained_intron
  ENST00000589969 NFIC-008 3452641-3454350 retained_intron
  ENST00000590282 NFIC-005 3366583-3462900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341919ENST00000395111ENST00000443272ENST00000586919ENST00000589123ENST00000590282
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341919 N/A N/A 4.642±0.00 3.577±0.00 N/A N/A 8.359±0.00 3.021±0.00 13.411±0.00 5.392±3.19 12.774±0.00 23.662±0.00
ENST00000395111 N/A N/A N/A N/A N/A N/A N/A N/A 5.189±0.00 N/A 5.215±0.00 6.244±0.00
ENST00000443272 N/A N/A N/A N/A N/A 8.697±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586919 N/A 6.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589123 25.639±0.00 N/A 48.609±0.00 N/A 2.833±2.54 7.938±5.94 N/A 10.306±0.00 N/A 54.342±52.54 3.420±0.00 5.428±0.00
ENST00000590282 N/A N/A N/A N/A 1.916±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001159 IEA core promoter proximal region DNA binding
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043210 nfic nuclear factor I/C protein_coding Danio_rerio
ENSMUSG00000055053 Nfic nuclear factor I/C protein_coding Mus_musculus

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