C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/C (CCAAT-binding transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586919 NFIC-011 ENSG00000141905 9606 + 19:3359683-3456600 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000586919
Transcript ID Bladder
ENST00000586919 6.667±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006260 IEA DNA replication
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117966 Nfic-004 protein_coding Mus_musculus 0 859
ENSMUST00000020461 Nfic-002 protein_coding Mus_musculus 0 859
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0 782
ENSMUST00000078185 Nfic-005 protein_coding Mus_musculus 0 699
ENSDART00000044670 nfixb-201 protein_coding Danio_rerio 0 566
ENSDART00000090235 nfixb-202 protein_coding Danio_rerio 0 566
ENSDART00000139001 nfixb-001 protein_coding Danio_rerio 0 566
ENSMUST00000109762 Nfix-004 protein_coding Mus_musculus 0 564
ENSMUST00000109764 Nfix-001 protein_coding Mus_musculus 0 564
ENSMUST00000126806 Nfix-005 protein_coding Mus_musculus 0 560
ENSMUST00000099070 Nfix-002 protein_coding Mus_musculus 0 560
ENSMUST00000076715 Nfix-003 protein_coding Mus_musculus 0 560
ENSDART00000088668 nfic-201 protein_coding Danio_rerio 0 472
ENSDART00000138604 nfic-001 protein_coding Danio_rerio 0 472
ENSMUST00000052018 Nfia-004 protein_coding Mus_musculus 0 355
ENSMUST00000152023 Nfia-005 protein_coding Mus_musculus 0 333
ENSMUST00000092532 Nfia-201 protein_coding Mus_musculus 0 329
ENSMUST00000107062 Nfia-003 protein_coding Mus_musculus 0 329
ENSMUST00000107057 Nfia-002 protein_coding Mus_musculus 0 329
ENSMUST00000075448 Nfia-001 protein_coding Mus_musculus 0 329
ENSMUST00000140916 Nfic-009 protein_coding Mus_musculus 1e-28 132

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