C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor I/C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055053 Nfic 10090 - 10:81396186-81431005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020461 Nfic-002 81399138-81427173 protein_coding
  ENSMUST00000078185 Nfic-005 81399138-81427114 protein_coding
  ENSMUST00000105321 Nfic-001 81396186-81427187 protein_coding
  ENSMUST00000117966 Nfic-004 81400953-81431005 protein_coding
  ENSMUST00000140916 Nfic-009 81400769-81407641 protein_coding
  ENSMUST00000152670 Nfic-008 81399196-81400554 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020461ENSMUST00000105321ENSMUST00000117966ENSMUST00000140916
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020461 N/A N/A N/A 10.488±0.00 N/A N/A N/A N/A N/A 19.880±2.59 N/A 1.713±0.18 N/A
ENSMUST00000105321 11.148±7.90 13.976±10.62 2.739±2.60 6.009±3.99 2.822±1.35 5.835±6.28 10.810±9.35 1.295±1.29 7.574±4.49 12.168±2.87 8.188±6.32 0.536±0.12 2.278±0.80
ENSMUST00000117966 N/A N/A 39.188±0.00 N/A N/A N/A N/A N/A N/A N/A 38.914±0.00 2.844±0.71 2.630±0.00
ENSMUST00000140916 N/A N/A 46.672±0.00 N/A N/A N/A N/A N/A N/A N/A 68.925±0.00 5.673±0.88 6.441±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001159 IEA core promoter proximal region DNA binding
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043210 nfic nuclear factor I/C protein_coding Danio_rerio
ENSG00000141905 NFIC nuclear factor I/C (CCAAT-binding transcription factor) protein_coding Homo_sapiens

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