C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3-domain GRB2-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141985 SH3GL1 9606 - 19:4360370-4400547 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269886 SH3GL1-001 4360370-4400547 protein_coding
  ENST00000417295 SH3GL1-002 4361316-4400525 protein_coding
  ENST00000593591 SH3GL1-004 4363822-4390610 protein_coding
  ENST00000598219 SH3GL1-005 4366503-4396023 protein_coding
  ENST00000598230 SH3GL1-006 4363853-4380292 protein_coding
  ENST00000598564 SH3GL1-003 4360371-4400418 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269886ENST00000417295ENST00000593591ENST00000598564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269886 49.488±0.00 38.794±0.00 0.492±0.00 8.063±6.85 17.219±15.61 18.665±18.08 2.633±2.16 8.970±7.11 4.901±2.86 11.362±10.91 6.346±0.00 32.724±28.38 51.643±21.60 24.336±9.40
ENST00000417295 N/A N/A N/A N/A 0.557±0.00 N/A N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A
ENST00000593591 N/A N/A N/A N/A N/A N/A N/A 0.858±0.00 N/A N/A N/A N/A N/A N/A
ENST00000598564 N/A N/A 1.306±0.00 4.572±0.00 N/A N/A 3.198±0.00 4.996±0.00 4.999±0.00 15.868±0.00 6.447±0.00 10.233±0.00 N/A 7.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GU CIL_0005GU_0002 CGP 19:4343527-4400547
CIL_00036Q CIL_00036Q_0001 CGP 19:4360370-4445018

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA:IDA cytoplasm
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0007165 TAS signal transduction
GO:0007417 TAS central nervous system development
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0019902 IEA phosphatase binding
GO:0030054 IEA cell junction
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0051020 IEA GTPase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002642 sh3gl1b SH3-domain GRB2-like 1b protein_coding Danio_rerio
ENSDARG00000067958 sh3gl1a SH3-domain GRB2-like 1a protein_coding Danio_rerio
ENSMUSG00000003200 Sh3gl1 SH3-domain GRB2-like 1 protein_coding Mus_musculus

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