C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NUF2, NDC80 kinetochore complex component
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143228 NUF2 9606 + 1:163266576-163355764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271452 NUF2-001 163321954-163355764 protein_coding
  ENST00000367900 NUF2-002 163321935-163355764 protein_coding
  ENST00000442820 NUF2-004 163321935-163339477 protein_coding
  ENST00000450453 NUF2-003 163321890-163336848 protein_coding
  ENST00000487578 NUF2-007 163321986-163328561 retained_intron
  ENST00000490881 NUF2-006 163321964-163338093 processed_transcript
  ENST00000497990 NUF2-005 163322046-163345718 nonsense_mediated_decay
  ENST00000524800 NUF2-008 163321900-163355727 protein_coding
  ENST00000527120 NUF2-010 163339281-163343823 retained_intron
  ENST00000527439 NUF2-012 163338015-163346240 retained_intron
  ENST00000531529 NUF2-011 163340255-163343815 retained_intron
  ENST00000534289 NUF2-009 163266576-163336786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000271452ENST00000367900
Transcript ID Ovary Placenta Testis
ENST00000271452 6.753±0.00 1.701±0.00 5.383±0.00
ENST00000367900 8.639±0.00 N/A 9.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CL CIL_0009CL_0001 VISTA 1:163089441-163690704
CIL_0008AF CIL_0008AF_0001 VISTA 1:163172151-163773052
CIL_0009BK CIL_0009BK_0001 VISTA 1:163238175-163839349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 IEA:NAS chromosome, centromeric region
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0007059 NAS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0016020 IDA membrane
GO:0031262 IDA Ndc80 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034624 nuf2 NUF2, NDC80 kinetochore complex component, homolog protein_coding Danio_rerio
ENSMUSG00000026683 Nuf2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein_coding Mus_musculus

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