C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: papillary renal cell carcinoma (translocation-associated)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143294 PRCC 9606 + 1:156750610-156800817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271526 PRCC-001 156767500-156800817 protein_coding
  ENST00000454659 PRCC-004 156786891-156800771 protein_coding
  ENST00000459707 PRCC-005 156791376-156794804 retained_intron
  ENST00000469071 PRCC-002 156795812-156800812 retained_intron
  ENST00000473387 PRCC-003 156767553-156786980 processed_transcript
  ENST00000491853 PRCC-006 156750610-156791792 processed_transcript
  ENST00000526188 PRCC-008 156786875-156800497 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271526ENST00000454659ENST00000459707ENST00000469071ENST00000473387ENST00000526188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271526 26.534±0.00 34.980±0.00 0.504±0.00 13.593±11.36 13.798±12.52 18.051±0.00 14.934±0.00 13.246±11.36 8.222±6.58 20.832±0.00 12.507±11.28 22.106±17.03 24.950±8.67 22.696±10.96
ENST00000454659 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.958±0.00 N/A 10.612±0.00 10.343±0.00 N/A
ENST00000459707 N/A N/A N/A N/A N/A N/A N/A N/A 2.338±0.00 4.780±0.00 N/A N/A N/A N/A
ENST00000469071 N/A N/A N/A N/A 0.598±0.00 0.851±0.00 0.305±0.00 N/A N/A 0.474±0.00 0.791±0.00 0.958±0.00 N/A N/A
ENST00000473387 N/A N/A 3.994±0.00 7.260±0.00 3.679±0.00 4.672±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526188 N/A N/A N/A 17.358±0.00 N/A N/A 0.476±0.00 N/A N/A N/A 11.525±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007093 IDA mitotic cell cycle checkpoint
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063252 prcc papillary renal cell carcinoma (translocation-associated) protein_coding Danio_rerio
ENSMUSG00000004895 Prcc papillary renal cell carcinoma (translocation-associated) protein_coding Mus_musculus

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