C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, alpha 1, skeletal muscle
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143632 ACTA1 9606 - 1:229431245-229434098 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366683 ACTA1-201 229431249-229434098 protein_coding
  ENST00000366684 ACTA1-001 229431245-229434094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366683ENST00000366684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366683 0.516±0.00 N/A N/A 0.203±0.09 N/A 0.255±0.00 N/A 0.055±0.00 0.082±0.00 0.410±0.00 N/A 0.312±0.00 N/A 0.178±0.00
ENST00000366684 0.670±0.00 0.736±0.00 2.137±0.00 0.936±0.60 702.748±694.50 1.083±0.21 693.262±421.26 0.451±0.13 12.357±12.27 4.915±4.59 11590.695±7932.61 1.452±1.01 8.235±7.70 120.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RZ CIL_0005RZ_0001 CGP 1:229321005-229434098
CIL_0005RY CIL_0005RY_0001 CGP 1:229431245-229508341

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 TAS ATP binding
GO:0005615 IDA extracellular space
GO:0005829 TAS cytosol
GO:0005865 IDA striated muscle thin filament
GO:0005884 IDA actin filament
GO:0006936 TAS muscle contraction
GO:0009612 IEA response to mechanical stimulus
GO:0009991 IEA response to extracellular stimulus
GO:0010226 IEA response to lithium ion
GO:0015629 IMP actin cytoskeleton
GO:0016049 IEA cell growth
GO:0017022 TAS myosin binding
GO:0030017 IDA sarcomere
GO:0030049 TAS muscle filament sliding
GO:0030240 IMP skeletal muscle thin filament assembly
GO:0043503 IEA skeletal muscle fiber adaptation
GO:0043531 TAS ADP binding
GO:0048545 IEA response to steroid hormone
GO:0048741 ISS skeletal muscle fiber development
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031972 Acta1 actin, alpha 1, skeletal muscle protein_coding Mus_musculus

Loading