C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 1, skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366683 ACTA1-201 ENSG00000143632 9606 - 1:229431249-229434098 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverLungOvaryTestisENST00000366683
Transcript ID Adipose Brain Colon Kidney Liver Lung Ovary Testis
ENST00000366683 0.516±0.00 0.203±0.09 0.255±0.00 0.055±0.00 0.082±0.00 0.410±0.00 0.312±0.00 0.178±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RZ CIL_0005RZ_0001 CGP 1:229321005-229434098
CIL_0005RY CIL_0005RY_0001 CGP 1:229431245-229508341

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 619
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 580
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 525
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 520
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 497
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 466
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 466
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 464
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 464
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 464
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 464
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 459
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 457
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 457
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 457
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 457
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 453
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 453
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 438
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 424
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 420
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 398
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 392
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 388
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 388
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 388
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 370
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 370
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 370
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 353
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 351
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 344
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 344
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 344
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 335
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 331
ENSDART00000080664 protein_coding Danio_rerio 0 318
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 313
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 313
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 303
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 294
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 294
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 292
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 287
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 279
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 279
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 279
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 248
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 217
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 4.99997e-41 172
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 9e-34 148
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 9e-34 148
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 3e-33 147
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 3e-33 147
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 3e-19 100

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