C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 1, skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366684 ACTA1-001 ENSG00000143632 9606 - 1:229431245-229434094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366684 0.670±0.00 0.736±0.00 2.137±0.00 0.936±0.60 702.748±694.50 1.083±0.21 693.262±421.26 0.451±0.13 12.357±12.27 4.915±4.59 11590.695±7932.61 1.452±1.01 8.235±7.70 120.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RZ CIL_0005RZ_0001 CGP 1:229321005-229434098
CIL_0005RY CIL_0005RY_0001 CGP 1:229431245-229508341

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 TAS ATP binding
GO:0005615 IDA extracellular space
GO:0005829 TAS cytosol
GO:0005865 IDA striated muscle thin filament
GO:0005884 IDA actin filament
GO:0006936 TAS muscle contraction
GO:0009612 IEA response to mechanical stimulus
GO:0009991 IEA response to extracellular stimulus
GO:0010226 IEA response to lithium ion
GO:0015629 IMP actin cytoskeleton
GO:0016049 IEA cell growth
GO:0017022 TAS myosin binding
GO:0030017 IDA sarcomere
GO:0030049 TAS muscle filament sliding
GO:0030240 IMP skeletal muscle thin filament assembly
GO:0043503 IEA skeletal muscle fiber adaptation
GO:0043531 TAS ADP binding
GO:0048545 IEA response to steroid hormone
GO:0048741 ISS skeletal muscle fiber development
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1550
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1303
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1290
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1229
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1157
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1123
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1110
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1090
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1083
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1079
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1079
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1068
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1068
ENSDART00000080664 protein_coding Danio_rerio 0 1057
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 1051
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 1042
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1031
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1027
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1027
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 981
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 972
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 946
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 833
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 826
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 798
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 773
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 745
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 739
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 621
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 621
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 619
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 619
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 582
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 569
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 564
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 562
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 551
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 547
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 473
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 438
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 392
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 388
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 381
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 353
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 351
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 344
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 344
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 344
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 320
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 296
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 294
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 279
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 217
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 7.00005e-41 172
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 3e-19 100

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