C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptosomal-associated protein, 47kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143740 SNAP47 9606 + 1:227728539-227781231 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315781 SNAP47-201 227734996-227781231 protein_coding
  ENST00000366759 SNAP47-001 227734996-227781226 protein_coding
  ENST00000366760 SNAP47-002 227728657-227781226 protein_coding
  ENST00000418653 SNAP47-004 227735431-227776970 protein_coding
  ENST00000426344 SNAP47-003 227735436-227776969 protein_coding
  ENST00000470038 SNAP47-008 227736173-227748115 processed_transcript
  ENST00000475930 SNAP47-006 227728618-227748186 processed_transcript
  ENST00000478768 SNAP47-009 227748154-227770744 protein_coding
  ENST00000480265 SNAP47-010 227728549-227734352 processed_transcript
  ENST00000480897 SNAP47-005 227728539-227734352 processed_transcript
  ENST00000491439 SNAP47-007 227728707-227759485 processed_transcript
  ENST00000606873 SNAP47-011 227748063-227759652 protein_coding
  ENST00000617596 SNAP47-012 227735453-227781226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315781ENST00000366759ENST00000366760ENST00000418653ENST00000426344ENST00000491439ENST00000617596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315781 N/A N/A N/A N/A N/A N/A 0.732±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000366759 N/A N/A N/A N/A N/A N/A 0.766±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000366760 2.123±0.00 N/A N/A 4.918±0.00 N/A N/A 7.105±0.00 2.154±0.00 N/A 1.314±0.00 N/A 6.943±0.00 5.433±0.00 N/A
ENST00000418653 N/A N/A N/A N/A N/A 1.665±0.00 N/A N/A N/A 1.218±0.00 N/A N/A N/A N/A
ENST00000426344 N/A N/A 0.561±0.00 N/A N/A N/A N/A N/A N/A N/A 1.591±0.00 N/A N/A N/A
ENST00000491439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.763±0.00 N/A N/A N/A
ENST00000617596 6.836±0.00 7.412±0.00 N/A 11.750±4.26 4.216±2.36 4.723±3.31 9.026±0.00 6.227±4.94 3.882±0.72 3.873±1.94 7.613±4.83 15.525±16.35 12.320±5.14 17.461±2.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000C4 CIL_0000C4_0002 CGP 1:227728539-227781231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0016020 IEA membrane
GO:0030425 IEA dendrite
GO:0031083 IDA BLOC-1 complex
GO:0043025 IEA neuronal cell body
GO:0060291 IEA long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063445 snap47 synaptosomal-associated protein, 47 protein_coding Danio_rerio
ENSMUSG00000009894 Snap47 synaptosomal-associated protein, 47 protein_coding Mus_musculus

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