C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptosomal-associated protein, 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009894 Snap47 10090 - 11:59407134-59451186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010038 Snap47-001 59407134-59449999 protein_coding
  ENSMUST00000120940 Snap47-006 59407144-59450007 protein_coding
  ENSMUST00000125846 Snap47-007 59438449-59451186 protein_coding
  ENSMUST00000132969 Snap47-002 59438034-59449999 protein_coding
  ENSMUST00000136436 Snap47-004 59428767-59449913 protein_coding
  ENSMUST00000145550 Snap47-005 59438256-59447491 protein_coding
  ENSMUST00000150297 Snap47-008 59438288-59449916 protein_coding
  ENSMUST00000156146 Snap47-003 59428761-59449999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010038ENSMUST00000120940ENSMUST00000136436ENSMUST00000156146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010038 27.719±1.10 29.761±0.84 34.199±1.76 154.962±10.34 14.864±3.20 11.058±1.47 20.474±1.00 47.645±7.68 27.898±14.66 17.471±1.04 8.570±0.52 26.192±5.31 27.124±5.49 11.227±2.77
ENSMUST00000120940 11.660±0.78 26.880±4.03 N/A N/A 7.741±0.96 7.639±2.51 N/A 19.698±0.00 13.448±0.00 11.530±1.81 N/A 16.900±2.40 N/A N/A
ENSMUST00000136436 N/A N/A N/A 197.590±0.00 N/A N/A N/A N/A N/A N/A N/A 37.725±0.00 32.631±7.56 N/A
ENSMUST00000156146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.684±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000C4 CIL_0000C4_0003 CGP 11:59407134-59458567

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016020 IDA membrane
GO:0030425 IDA dendrite
GO:0031083 ISS BLOC-1 complex
GO:0043025 IDA neuronal cell body
GO:0060291 IMP long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063445 snap47 synaptosomal-associated protein, 47 protein_coding Danio_rerio
ENSG00000143740 SNAP47 synaptosomal-associated protein, 47kDa protein_coding Homo_sapiens

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