C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lamin B receptor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143815 LBR 9606 - 1:225401502-225428925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272163 LBR-001 225401502-225428035 protein_coding
  ENST00000338179 LBR-201 225401503-225428855 protein_coding
  ENST00000421383 LBR-003 225423921-225427897 protein_coding
  ENST00000424022 LBR-007 225406562-225411417 retained_intron
  ENST00000425080 LBR-002 225419263-225428925 protein_coding
  ENST00000441022 LBR-006 225403090-225404565 retained_intron
  ENST00000487054 LBR-005 225417550-225419362 processed_transcript
  ENST00000488632 LBR-004 225419725-225422427 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272163ENST00000425080ENST00000441022ENST00000488632
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272163 17.482±0.00 12.993±0.00 1.421±0.00 2.691±0.00 8.823±0.80 18.523±0.00 1.801±0.82 8.039±3.45 6.644±1.94 7.541±0.00 2.306±2.24 9.735±1.60 6.474±1.28 6.266±5.50
ENST00000425080 N/A N/A 3.365±0.00 1.705±0.00 7.170±0.00 11.850±0.00 N/A 5.413±0.00 N/A N/A N/A 9.724±0.00 N/A N/A
ENST00000441022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.178±0.00 N/A 15.500±0.00
ENST00000488632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.580±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BZ CIL_0000BZ_0002 CGP 1:225401502-225653142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005521 TAS lamin binding
GO:0005635 TAS nuclear envelope
GO:0005639 TAS integral component of nuclear inner membrane
GO:0005739 IDA mitochondrion
GO:0006695 TAS cholesterol biosynthetic process
GO:0016020 IDA:IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016628 IEA oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0031965 IDA nuclear membrane
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0055114 IEA oxidation-reduction process
GO:0070087 IPI chromo shadow domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014013 lbr lamin B receptor protein_coding Danio_rerio
ENSMUSG00000004880 Lbr lamin B receptor protein_coding Mus_musculus

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