C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272163 LBR-001 ENSG00000143815 9606 - 1:225401502-225428035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272163 17.482±0.00 12.993±0.00 1.421±0.00 2.691±0.00 8.823±0.80 18.523±0.00 1.801±0.82 8.039±3.45 6.644±1.94 7.541±0.00 2.306±2.24 9.735±1.60 6.474±1.28 6.266±5.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BZ CIL_0000BZ_0002 CGP 1:225401502-225653142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005521 TAS lamin binding
GO:0005635 TAS nuclear envelope
GO:0005639 TAS integral component of nuclear inner membrane
GO:0005739 IDA mitochondrion
GO:0006695 TAS cholesterol biosynthetic process
GO:0016020 IDA:IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016628 IEA oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0031965 IDA nuclear membrane
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0055114 IEA oxidation-reduction process
GO:0070087 IPI chromo shadow domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005003 Lbr-201 protein_coding Mus_musculus 0 1262

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