C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000BZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014013-ENSDARG00000032049 CGP 7955 20:36420271-36641921
GeneTranscriptPositionBiotype
ENSDARG00000014013 (lbr)
lamin B receptor 		ENSDART00000019145 (lbr-001) 36420271-36441530 protein_coding
ENSDART00000076419 (lbr-201) 36420888-36441498 protein_coding
ENSDART00000122527 (lbr-202) 36420276-36433435 protein_coding
ENSDARG00000032049 (enah)
enabled homolog (Drosophila) 		ENSDART00000026539 (enah-001) 36444555-36584564 protein_coding
ENSDART00000062893 (enah-201) 36541494-36600083 protein_coding
ENSDART00000152856 (enah-003) 36515601-36641921 protein_coding
ENSDART00000153147 (enah-002) 36446266-36449296 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0000BZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143815-ENSG00000154380 CGP 9606 1:225401502-225653142
GeneTranscriptPositionBiotype
ENSG00000143815 (LBR)
lamin B receptor 		ENST00000272163 (LBR-001) 225401502-225428035 protein_coding
ENST00000338179 (LBR-201) 225401503-225428855 protein_coding
ENST00000421383 (LBR-003) 225423921-225427897 protein_coding
ENST00000424022 (LBR-007) 225406562-225411417 retained_intron
ENST00000425080 (LBR-002) 225419263-225428925 protein_coding
ENST00000441022 (LBR-006) 225403090-225404565 retained_intron
ENST00000487054 (LBR-005) 225417550-225419362 processed_transcript
ENST00000488632 (LBR-004) 225419725-225422427 processed_transcript
ENSG00000234476 (RP11-496N12.6)
 ENST00000428642 (RP11-496N12.6-001) 225447243-225465343 sense_intronic
ENST00000433058 (RP11-496N12.6-002) 225447991-225465283 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0000BZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004880-ENSMUSG00000022995 CGP 10090 1:181815316-182019980
GeneTranscriptPositionBiotype
ENSMUSG00000004880 (Lbr)
lamin B receptor 		ENSMUST00000005003 (Lbr-201) 181815316-181842401 protein_coding
ENSMUSG00000022995 (Enah)
enabled homolog (Drosophila) 		ENSMUST00000078719 (Enah-201) 181904445-182019980 protein_coding
ENSMUST00000111024 (Enah-202) 181904445-182019980 protein_coding
ENSMUST00000111025 (Enah-203) 181904445-182019980 protein_coding
ENSMUST00000111030 (Enah-204) 181904445-182019980 protein_coding
ENSMUST00000177811 (Enah-205) 181904445-182019980 protein_coding
ENSMUSG00000056699 (Gm5533)
predicted gene 5533 		ENSMUST00000070987 (Gm5533-001) 181851574-181853189 lincRNA
ENSMUSG00000089429 (Gm26004)
predicted gene, 26004 		ENSMUST00000158804 (Gm26004-201) 181840453-181840568 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BZ_0001ENSDARG00000014013ENSDART00000019145ENSDART00000076419ENSDART00000122527ENSDARG00000032049ENSDART00000026539ENSDART00000062893ENSDART00000152856ENSDART00000153147CIL_0000BZ_0002ENSG00000143815ENST00000272163ENST00000338179ENST00000421383ENST00000424022ENST00000425080ENST00000441022ENST00000487054ENST00000488632ENSG00000234476ENST00000428642ENST00000433058CIL_0000BZ_0003ENSMUSG00000004880ENSMUST00000005003ENSMUSG00000022995ENSMUST00000078719ENSMUST00000111024ENSMUST00000111025ENSMUST00000111030ENSMUST00000177811ENSMUSG00000056699ENSMUST00000070987ENSMUSG00000089429ENSMUST00000158804
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BZ_0001ENSDARG00000014013ENSDART00000019145ENSDART00000076419ENSDART00000122527ENSDARG00000032049ENSDART00000026539CIL_0000BZ_0002ENSG00000143815ENST00000272163ENST00000425080ENST00000441022ENST00000488632ENSG00000234476ENST00000428642ENST00000433058CIL_0000BZ_0003ENSMUSG00000004880ENSMUST00000005003ENSMUSG00000022995ENSMUST00000078719ENSMUST00000111024ENSMUST00000111025ENSMUST00000111030ENSMUST00000177811ENSMUSG00000056699ENSMUST00000070987ENSMUSG00000089429ENSMUST00000158804
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014013 ENSDART00000019145 N/A N/A N/A 3.846±1.56 N/A N/A 7.694±1.56 3.218±0.00 N/A N/A 1.752±0.00 N/A N/A N/A
ENSDART00000076419 N/A N/A N/A 1.655±0.40 N/A N/A 8.126±6.01 N/A 0.777±0.00 N/A 2.582±0.00 N/A N/A N/A
ENSDART00000122527 N/A N/A N/A N/A N/A N/A 5.638±3.97 3.932±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000032049 ENSDART00000026539 N/A N/A N/A 7.334±2.49 N/A N/A 7.207±0.00 2.094±0.99 N/A N/A N/A N/A N/A N/A
ENSDART00000062893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143815 ENST00000272163 17.482±0.00 12.993±0.00 1.421±0.00 2.691±0.00 8.823±0.80 18.523±0.00 1.801±0.82 8.039±3.45 6.644±1.94 7.541±0.00 2.306±2.24 9.735±1.60 6.474±1.28 6.266±5.50
ENST00000338179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425080 N/A N/A 3.365±0.00 1.705±0.00 7.170±0.00 11.850±0.00 N/A 5.413±0.00 N/A N/A N/A 9.724±0.00 N/A N/A
ENST00000441022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.178±0.00 N/A 15.500±0.00
ENST00000487054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.580±0.00 N/A N/A N/A
ENSG00000234476 ENST00000428642 N/A 0.064±0.00 N/A N/A N/A 0.820±0.00 N/A N/A N/A N/A N/A N/A 0.224±0.00 0.059±0.00
ENST00000433058 N/A 0.075±0.00 N/A 0.450±0.00 N/A 0.703±0.00 0.045±0.00 N/A N/A N/A N/A 0.114±0.05 0.121±0.03 0.054±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004880 ENSMUST00000005003 11.068±3.62 7.080±0.38 12.382±0.15 5.483±4.01 14.429±6.10 16.336±1.97 5.297±0.93 4.891±2.11 26.554±26.38 15.588±5.87 5.154±0.52 10.077±3.40 12.090±8.81 5.672±2.99
ENSMUSG00000022995 ENSMUST00000078719 N/A N/A N/A N/A 0.300±0.08 0.519±0.00 N/A N/A N/A N/A N/A 1.628±0.00 N/A N/A
ENSMUST00000111024 1.217±0.10 0.748±0.35 N/A 7.939±0.00 0.310±0.03 0.906±0.22 3.128±0.00 0.775±0.00 0.005±0.00 0.934±0.00 1.169±0.09 3.234±0.90 2.166±0.64 2.204±0.44
ENSMUST00000111025 0.522±0.00 2.563±1.46 11.015±0.00 11.420±0.00 1.218±0.29 4.339±0.95 2.483±0.00 2.288±0.95 0.065±0.08 N/A N/A 14.209±10.24 10.810±9.35 22.296±26.98
ENSMUST00000111030 N/A 0.540±0.00 N/A N/A 0.342±0.01 1.133±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177811 N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000056699 ENSMUST00000070987 0.046±0.01 N/A 0.025±0.00 0.006±0.00 0.132±0.04 0.139±0.08 0.023±0.00 0.027±0.00 0.020±0.01 0.122±0.06 0.033±0.00 0.162±0.02 N/A 0.040±0.01
ENSMUSG00000089429 ENSMUST00000158804 N/A N/A 38.961±0.00 N/A N/A N/A N/A N/A 12.318±2.73 N/A N/A 34.308±0.00 N/A N/A

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