C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger CCCH-type containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144161 ZC3H8 9606 - 2:112211525-112255136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272570 ZC3H8-201 112215865-112255087 protein_coding
  ENST00000409573 ZC3H8-001 112211525-112255111 protein_coding
  ENST00000464305 ZC3H8-003 112236586-112255136 processed_transcript
  ENST00000466259 ZC3H8-006 112233335-112238591 retained_intron
  ENST00000474234 ZC3H8-002 112233326-112255023 processed_transcript
  ENST00000476902 ZC3H8-004 112215905-112231885 processed_transcript
  ENST00000495264 ZC3H8-005 112250107-112255060 retained_intron
  ENST00000615791 ZC3H8-202 112215876-112255025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272570ENST00000409573ENST00000466259ENST00000474234ENST00000476902ENST00000495264ENST00000615791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272570 0.360±0.00 1.802±0.00 0.489±0.00 1.565±0.00 N/A 0.647±0.14 1.042±0.25 N/A 1.299±0.74 0.724±0.00 N/A 3.438±1.56 N/A 4.155±0.00
ENST00000409573 N/A N/A N/A 0.277±0.00 N/A N/A N/A 0.518±0.00 0.396±0.00 N/A 0.330±0.00 0.806±0.50 0.062±0.00 N/A
ENST00000466259 N/A N/A N/A 4.832±0.00 4.403±0.00 N/A N/A 2.416±0.00 N/A 1.800±0.00 N/A 8.408±0.00 N/A N/A
ENST00000474234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A
ENST00000476902 N/A N/A 2.528±0.00 N/A 2.488±0.00 2.267±0.00 N/A 1.452±0.00 1.405±0.00 N/A N/A 15.122±10.68 2.474±0.00 13.567±0.00
ENST00000495264 N/A N/A 4.589±0.00 N/A N/A N/A N/A N/A N/A N/A 4.617±0.00 N/A N/A N/A
ENST00000615791 0.605±0.00 N/A 0.779±0.00 N/A 0.976±0.30 1.100±0.00 0.727±0.00 1.863±0.00 0.193±0.00 0.644±0.00 0.441±0.14 6.580±2.41 0.857±0.25 2.928±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047V CIL_00047V_0001 CGP 2:112138385-112255136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006915 IEA apoptotic process
GO:0008023 IDA transcription elongation factor complex
GO:0015030 IDA Cajal body
GO:0033085 IMP negative regulation of T cell differentiation in thymus
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0043029 IMP T cell homeostasis
GO:0043565 ISS sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter
GO:0046677 IDA response to antibiotic
GO:0046872 IEA metal ion binding
GO:0070245 IMP positive regulation of thymocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075165 ZC3H8 zinc finger CCCH-type containing 8 protein_coding Danio_rerio
ENSMUSG00000027387 Zc3h8 zinc finger CCCH type containing 8 protein_coding Mus_musculus

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