C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ly1 antibody reactive
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145220 LYAR 9606 - 4:4267701-4290169 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343470 LYAR-001 4267701-4290169 protein_coding
  ENST00000452476 LYAR-201 4267704-4290021 protein_coding
  ENST00000502917 LYAR-003 4267701-4268932 retained_intron
  ENST00000513174 LYAR-002 4281783-4290038 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343470ENST00000452476ENST00000513174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343470 7.067±0.00 9.894±0.00 N/A 1.534±0.76 4.508±0.00 5.553±4.46 2.778±2.37 3.810±0.00 2.100±1.42 2.493±2.25 8.138±0.00 7.914±4.71 4.711±2.50 56.108±18.93
ENST00000452476 N/A N/A 0.527±0.00 N/A 1.002±0.00 N/A N/A 0.886±0.00 N/A 1.075±0.00 0.473±0.00 1.006±0.00 2.541±0.00 18.887±3.78
ENST00000513174 N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A 1.341±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323
CIL_000707 CIL_000707_0002 CGP 4:4235542-4290169
CIL_0003E6 CIL_0003E6_0002 CGP 4:4267701-4321786

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032505 LYAR Ly1 antibody reactive protein_coding Danio_rerio
ENSMUSG00000067367 Lyar Ly1 antibody reactive clone protein_coding Mus_musculus

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