C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ly1 antibody reactive clone
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067367 Lyar 10090 + 5:38220470-38234306 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087514 Lyar-001 38220470-38234306 protein_coding
  ENSMUST00000114106 Lyar-003 38220678-38234296 protein_coding
  ENSMUST00000123207 Lyar-004 38220520-38227915 protein_coding
  ENSMUST00000130721 Lyar-005 38220482-38230703 protein_coding
  ENSMUST00000131492 Lyar-009 38224648-38226460 retained_intron
  ENSMUST00000132190 Lyar-002 38220527-38230704 protein_coding
  ENSMUST00000146401 Lyar-007 38222965-38230683 nonsense_mediated_decay
  ENSMUST00000152066 Lyar-006 38220550-38225913 protein_coding
  ENSMUST00000154975 Lyar-010 38220529-38230988 nonsense_mediated_decay
  ENSMUST00000155300 Lyar-008 38220554-38228099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087514ENSMUST00000114106ENSMUST00000123207ENSMUST00000130721ENSMUST00000132190ENSMUST00000146401ENSMUST00000152066ENSMUST00000154975
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087514 1.617±0.72 0.723±0.17 10.152±0.57 7.390±1.94 0.943±0.39 0.537±0.23 2.509±0.26 2.411±1.08 19.263±18.51 1.279±0.55 5.249±1.10 2.881±6.35 26.114±19.88 116.994±13.62
ENSMUST00000114106 N/A N/A N/A N/A 1.211±0.00 0.246±0.06 N/A 0.706±0.00 N/A N/A N/A 6.414±6.18 20.854±9.85 226.959±326.83
ENSMUST00000123207 0.622±0.00 1.812±0.00 N/A N/A N/A 0.582±0.00 N/A 1.220±0.00 0.861±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130721 1.044±0.69 2.126±1.19 N/A 2.670±0.00 1.056±0.14 0.456±0.09 1.413±0.26 N/A 0.640±0.15 1.493±0.62 N/A 1.365±0.69 N/A N/A
ENSMUST00000132190 0.552±0.00 0.338±0.00 N/A N/A 0.682±0.21 0.525±0.18 N/A N/A N/A N/A N/A 1.198±0.82 N/A 99.830±17.69
ENSMUST00000146401 N/A N/A N/A N/A N/A 1.347±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.073±0.80 N/A N/A
ENSMUST00000154975 N/A N/A N/A N/A 0.418±0.00 0.945±0.33 N/A 0.697±0.00 0.877±0.00 N/A N/A 1.091±0.00 N/A 530.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032505 LYAR Ly1 antibody reactive protein_coding Danio_rerio
ENSG00000145220 LYAR Ly1 antibody reactive protein_coding Homo_sapiens

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