C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: group-specific component (vitamin D binding protein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145321 GC 9606 - 4:71741693-71804041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273951 GC-001 71741693-71784362 protein_coding
  ENST00000503364 GC-009 71741708-71754478 processed_transcript
  ENST00000503472 GC-005 71741739-71769400 processed_transcript
  ENST00000504199 GC-006 71741696-71804041 protein_coding
  ENST00000505234 GC-008 71763804-71769602 retained_intron
  ENST00000506245 GC-007 71765470-71786010 protein_coding
  ENST00000509740 GC-003 71741728-71784065 nonsense_mediated_decay
  ENST00000513476 GC-004 71741727-71784046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENST00000273951ENST00000503364ENST00000503472ENST00000504199ENST00000506245ENST00000509740ENST00000513476
Transcript ID Adipose Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENST00000273951 N/A 1.348±0.00 N/A N/A 190.353±0.00 N/A 0.086±0.00 N/A N/A N/A
ENST00000503364 N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A
ENST00000503472 0.004±0.00 N/A N/A 0.017±0.00 1.833±0.00 975.179±0.00 N/A N/A N/A 0.081±0.00
ENST00000504199 N/A N/A N/A 1.892±0.00 480.954±480.31 150.581±150.52 N/A N/A N/A N/A
ENST00000506245 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENST00000509740 0.005±0.00 N/A 0.194±0.00 N/A 0.584±0.00 133.689±133.60 N/A 0.008±0.00 0.048±0.00 N/A
ENST00000513476 N/A N/A N/A N/A N/A 494.991±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D9 CIL_0000D9_0001 CGP 4:71187286-71804041
CIL_0000DA CIL_0000DA_0001 CGP 4:71741693-72148067

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IPI actin binding
GO:0005499 IEA:TAS vitamin D binding
GO:0005576 NAS extracellular region
GO:0005615 IEA:IDA extracellular space
GO:0005829 TAS cytosol
GO:0008202 TAS steroid metabolic process
GO:0042359 TAS vitamin D metabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0051180 IEA vitamin transport
GO:0051183 IEA vitamin transporter activity
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle
GO:1902118 IDA calcidiol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089310 gc group-specific component (vitamin D binding protein) protein_coding Danio_rerio
ENSMUSG00000035540 Gc group specific component protein_coding Mus_musculus

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