C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145734 BDP1 9606 + 5:71455615-71567820 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358731 BDP1-016 71455615-71567820 protein_coding
  ENST00000380675 BDP1-201 71455659-71509735 protein_coding
  ENST00000508157 BDP1-015 71494465-71511350 retained_intron
  ENST00000508917 BDP1-018 71455686-71545477 retained_intron
  ENST00000514903 BDP1-020 71522793-71567820 nonsense_mediated_decay
  ENST00000525844 BDP1-019 71532374-71567820 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358731ENST00000380675ENST00000508917ENST00000514903ENST00000525844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358731 0.664±0.00 0.770±0.00 1.918±0.00 2.496±0.56 1.133±0.00 2.772±1.06 1.233±0.02 0.756±0.00 0.723±0.52 2.617±0.00 0.425±0.00 1.486±0.65 0.317±0.15 1.816±0.02
ENST00000380675 N/A N/A N/A N/A 4.532±0.00 N/A N/A N/A N/A 3.033±0.00 0.406±0.00 2.443±0.00 N/A N/A
ENST00000508917 N/A 0.833±0.00 N/A N/A N/A N/A 0.420±0.00 0.964±0.00 1.636±0.00 N/A N/A N/A 0.893±0.00 N/A
ENST00000514903 N/A N/A N/A N/A 0.468±0.00 N/A N/A 1.007±0.09 0.153±0.00 0.419±0.00 0.386±0.00 N/A 0.250±0.07 0.932±0.00
ENST00000525844 N/A N/A N/A N/A N/A 0.850±0.00 N/A 1.373±0.00 0.290±0.00 N/A 0.755±0.00 0.855±0.02 0.446±0.11 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053091 BDP1 (1 of 2) B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Danio_rerio
ENSDARG00000058630 BDP1 (2 of 2) B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Danio_rerio
ENSMUSG00000049658 Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Mus_musculus

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