C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049658 Bdp1 10090 - 13:100017994-100104070 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038104 Bdp1-001 100017994-100104070 protein_coding
  ENSMUST00000099262 Bdp1-002 100017996-100056213 nonsense_mediated_decay
  ENSMUST00000105697 Bdp1-006 100043355-100046827 retained_intron
  ENSMUST00000109379 Bdp1-003 100023305-100103838 protein_coding
  ENSMUST00000163097 Bdp1-004 100097538-100103877 nonsense_mediated_decay
  ENSMUST00000167203 Bdp1-005 100078734-100098576 nonsense_mediated_decay
  ENSMUST00000167815 Bdp1-007 100061404-100066451 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038104ENSMUST00000099262ENSMUST00000109379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038104 0.612±0.27 0.431±0.20 0.427±0.06 0.850±0.21 0.540±0.29 0.468±0.23 0.424±0.15 0.410±0.16 0.815±0.63 0.997±0.40 0.549±0.15 0.655±0.17 1.669±1.10 0.447±0.15
ENSMUST00000099262 0.319±0.07 N/A 1.649±0.15 2.303±0.65 0.385±0.00 N/A 0.461±0.24 0.486±0.16 1.422±0.88 0.496±0.02 0.726±0.17 2.090±1.11 2.564±0.92 0.420±0.06
ENSMUST00000109379 N/A N/A N/A 1.841±1.32 0.287±0.00 N/A 0.161±0.02 0.133±0.00 0.617±0.39 N/A 0.152±0.01 4.229±2.20 2.174±1.96 1.084±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KO CIL_0002KO_0002 CGP 13:99948533-100104070

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 ISO nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053091 BDP1 (1 of 2) B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Danio_rerio
ENSDARG00000058630 BDP1 (2 of 2) B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Danio_rerio
ENSG00000145734 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein_coding Homo_sapiens

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