C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 26
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145819 ARHGAP26 9606 + 5:142770384-143229011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274498 ARHGAP26-001 142770384-143226485 protein_coding
  ENST00000378004 ARHGAP26-008 142770407-143229011 protein_coding
  ENST00000378013 ARHGAP26-014 142772717-142894335 protein_coding
  ENST00000418236 ARHGAP26-020 143054439-143223194 protein_coding
  ENST00000419676 ARHGAP26-019 143121112-143222413 nonsense_mediated_decay
  ENST00000421521 ARHGAP26-012 143207198-143216601 protein_coding
  ENST00000424007 ARHGAP26-018 143121115-143207473 nonsense_mediated_decay
  ENST00000425417 ARHGAP26-013 143207200-143216770 protein_coding
  ENST00000443045 ARHGAP26-009 143056083-143058159 protein_coding
  ENST00000443674 ARHGAP26-021 143037196-143224150 protein_coding
  ENST00000451259 ARHGAP26-015 142907322-143037223 protein_coding
  ENST00000461314 ARHGAP26-016 142907361-142932125 processed_transcript
  ENST00000464838 ARHGAP26-006 143010736-143014397 processed_transcript
  ENST00000469131 ARHGAP26-004 142907578-143054526 retained_intron
  ENST00000469396 ARHGAP26-005 142908722-143041890 processed_transcript
  ENST00000470032 ARHGAP26-007 143014080-143041714 processed_transcript
  ENST00000475287 ARHGAP26-003 142874893-142902013 retained_intron
  ENST00000477867 ARHGAP26-017 142903540-142922114 processed_transcript
  ENST00000486650 ARHGAP26-011 143164913-143226485 processed_transcript
  ENST00000489924 ARHGAP26-010 143133985-143147516 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274498ENST00000378004ENST00000378013ENST00000443674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274498 N/A N/A 0.618±0.00 1.438±0.00 0.857±0.00 N/A 1.139±0.00 N/A 1.406±0.00 1.705±0.00 0.635±0.00 1.074±0.21 0.506±0.00 N/A
ENST00000378004 1.946±0.00 2.414±0.00 0.326±0.00 4.514±2.60 1.794±0.00 1.941±0.11 2.182±1.26 1.037±0.00 0.518±0.03 1.291±0.00 N/A 0.984±0.46 1.485±0.20 3.166±0.98
ENST00000378013 N/A N/A 3.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443674 1.771±0.00 N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 5.812±0.00 2.823±0.00 0.694±0.00 2.619±0.30 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W6 CIL_0007W6_0001 VISTA 5:142250490-142852711

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005100 NAS Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0007009 IEA plasma membrane organization
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007399 NAS nervous system development
GO:0008093 IEA cytoskeletal adaptor activity
GO:0017124 IEA SH3 domain binding
GO:0030036 NAS actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0032321 NAS positive regulation of Rho GTPase activity
GO:0046847 IEA filopodium assembly
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000036452 Arhgap26 Rho GTPase activating protein 26 protein_coding Mus_musculus

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