C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274498 ARHGAP26-001 ENSG00000145819 9606 + 5:142770384-143226485 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryPlacentaENST00000274498
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENST00000274498 0.618±0.00 1.438±0.00 0.857±0.00 1.139±0.00 1.406±0.00 1.705±0.00 0.635±0.00 1.074±0.21 0.506±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W6 CIL_0007W6_0001 VISTA 5:142250490-142852711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 NAS Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0007009 IEA plasma membrane organization
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007399 NAS nervous system development
GO:0008093 IEA cytoskeletal adaptor activity
GO:0017124 IEA SH3 domain binding
GO:0030036 NAS actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0032321 NAS positive regulation of Rho GTPase activity
GO:0046847 IEA filopodium assembly
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097593 Arhgap26-001 protein_coding Mus_musculus 0 3579
ENSMUST00000155576 Arhgap26-017 protein_coding Mus_musculus 0 2780
ENSMUST00000154551 Arhgap26-002 protein_coding Mus_musculus 0 1197
ENSMUST00000123820 Arhgap26-007 processed_transcript Mus_musculus 0 904
ENSMUST00000137497 Arhgap26-003 protein_coding Mus_musculus 0 508
ENSMUST00000141058 Arhgap26-008 protein_coding Mus_musculus 0 494
ENSMUST00000115574 Arhgap26-006 retained_intron Mus_musculus 0 460
ENSMUST00000148850 Arhgap26-009 protein_coding Mus_musculus 0 425
ENSMUST00000151757 Arhgap26-016 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000148399 Arhgap26-004 processed_transcript Mus_musculus 0 309
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.00001 58

Loading